View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_31 (Length: 251)

Name: NF12879_low_31
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12879_low_31
NF12879_low_31
[»] chr1 (3 HSPs)
chr1 (1-241)||(16068531-16068771)
chr1 (37-241)||(16066262-16066464)
chr1 (150-190)||(46559811-46559851)
[»] chr6 (2 HSPs)
chr6 (67-241)||(3174796-3174970)
chr6 (37-190)||(20644881-20645035)
[»] chr2 (1 HSPs)
chr2 (37-241)||(3944406-3944610)
[»] chr8 (1 HSPs)
chr8 (37-180)||(4022660-4022803)
[»] chr4 (3 HSPs)
chr4 (37-190)||(33248893-33249047)
chr4 (37-107)||(25551650-25551720)
chr4 (132-222)||(25551770-25551859)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16068531 - 16068771
Alignment:
Q  1 tcaaaatatgataaaaagaagaaatgcatatttcaatttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068531 tcaaaatatgataaaaagaagaaatgcatatttcaatttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgag 16068630  T
Q  101 atagctagaggaccttcgtaaagttgagagaaaattaaaatatttcatattttagtggatgtttgtctattgtttttatgtctactttttgaatcatatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16068631 atagctagaggaccttcgtaaagttgagagaaaattaaaatatttcatattttagtggatgtttttctattgtttttatgtctactttttgaatcatatg 16068730  T
Q  201 cattatgcattataaatagaatctggtgaatatgtcctttg 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  16068731 cattatgcattataaatagaatctggtgaatatgtcctttg 16068771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 16066262 - 16066464
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgtaaagttgagagaaaatt 136  Q
    ||||||||||| ||||||  ||| ||| | |||| | ||||||||||||||||| ||||||||| || ||| || | ||||||| |||||  ||||||||    
T  16066262 tttgcataagggagacaaatttttttgcaatctt-agtttgctttgaatagcttatttgttgagttaactatagcaacttcgtagagttggaagaaaatt 16066360  T
Q  137 aaaatatttcatattttagtggatgtttgtctattgtttttatgtctactttttgaatcatatgcattatgcattataaatagaatctggtgaatatgtc 236  Q
    |||||||| | ||||||||| || |||||||||| |||||||||  ||| |||||||  ||||| |||||| | |||||||||||| | |||||||||||    
T  16066361 aaaatattacgtattttagttgacgtttgtctatcgtttttatgcttac-ttttgaactatatgtattatgtaatataaatagaatttagtgaatatgtc 16066459  T
Q  237 ctttg 241  Q
    |||||    
T  16066460 ctttg 16066464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 46559851 - 46559811
Alignment:
Q  150 ttttagtggatgtttgtctattgtttttatgtctacttttt 190  Q
    ||||||||||||||||||||| |||||||||  ||||||||    
T  46559851 ttttagtggatgtttgtctatcgtttttatgcttacttttt 46559811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 241
Target Start/End: Original strand, 3174796 - 3174970
Alignment:
Q  67 tcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgtaaagttgagagaaaattaaaatatttcatattttagtggatgtttgt 166  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |   |||||||||||||||| | ||||| ||||||||| |||    
T  3174796 tcttgagtttgctttgaatagcttgtttgttgtgatagctagaggaccttcgtaaagctagaagaaaattaaaatattacgtatttgagtggatgtctgt 3174895  T
Q  167 ctattgtttttatgtctactttttgaatcatatgcattatgcattataaatagaatctggtgaatatgtcctttg 241  Q
    ||||||||||||||  |||||| ||||| ||||| ||||||||||| |||||||||  ||||||||| |||||||    
T  3174896 ctattgtttttatgcatactttatgaattatatgtattatgcattacaaatagaattgggtgaatatttcctttg 3174970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 20644881 - 20645035
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgtaaagtt-gagagaaaat 135  Q
    ||||||||||| |||||| |||||||| | |||| | ||||||||||||| ||| ||| |||||||| ||| |  | ||||||| |||| ||   |||||    
T  20644881 tttgcataagggagacaaaatttgttgcagtcttcagtttgctttgaataacttatttattgagatatctataacaacttcgtagagttggaataaaaat 20644980  T
Q  136 taaaatatttcatattttagtggatgtttgtctattgtttttatgtctacttttt 190  Q
    |||||||||     ||||||||||||||||||||| |||||||||  ||||||||    
T  20644981 taaaatattaggcgttttagtggatgtttgtctatcgtttttatgcttacttttt 20645035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 37 - 241
Target Start/End: Original strand, 3944406 - 3944610
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgtaaagttgagagaaaatt 136  Q
    ||||||||||| |||||| |||||||| | |||||| |||||||| |||||||| ||||||||||||||||||  | ||||||| |||||  |||||||     
T  3944406 tttgcataagggagacaaaatttgttgcagtcttgagtttgctttcaatagcttatttgttgagatagctagaacaacttcgtagagttggaagaaaata 3944505  T
Q  137 aaaatatttcatattttagtggatgtttgtctattgtttttatgtctactttttgaatcatatgcattatgcattataaatagaatctggtg-aatatgt 235  Q
    |||| |||     ||||||||||||||||||||| |||||||||  ||| |||||||| ||||| |||||| | |||||||||||  ||||| |||||||    
T  3944506 aaaaaattaggcgttttagtggatgtttgtctatcgtttttatgcttac-ttttgaattatatgtattatgtaatataaatagaagttggtgtaatatgt 3944604  T
Q  236 cctttg 241  Q
    ||||||    
T  3944605 cctttg 3944610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 4022803 - 4022660
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgtaaagttgagagaaaatt 136  Q
    |||||||||||||||||  |||||||| | |||||| |||| ||||||| |||||||||||||||||||||||  | ||||||| ||||   ||||||||    
T  4022803 tttgcataaggaagacacaatttgttgcagtcttgagtttggtttgaatggcttgtttgttgagatagctagaacagcttcgtagagttagaagaaaatt 4022704  T
Q  137 aaaatatttcatattttagtggatgtttgtctattgtttttatg 180  Q
    ||||||||      |||||| ||||||||||||| |||||||||    
T  4022703 aaaatattaggcgctttagtagatgtttgtctatcgtttttatg 4022660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 33248893 - 33249047
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagctagaggaccttcgta-aagttgagagaaaat 135  Q
    ||||||||||| |||||| |||||||| | |||||| ||||||||||||||||| ||||||||||||||||||  | ||||||| | || ||   |||||    
T  33248893 tttgcataagggagacaaaatttgttgcaatcttgagtttgctttgaatagcttatttgttgagatagctagatcaacttcgtagaggtggaataaaaat 33248992  T
Q  136 taaaatatttcatattttagtggatgtttgtctattgtttttatgtctacttttt 190  Q
    |||||| ||     ||||||||||||||| ||||| |||||||||  ||||||||    
T  33248993 taaaatcttaagcgttttagtggatgtttatctatcgtttttatgcttacttttt 33249047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 25551650 - 25551720
Alignment:
Q  37 tttgcataaggaagacaacatttgttgtattcttgaatttgctttgaatagcttgtttgttgagatagcta 107  Q
    |||||||| ||||||||| |||||||| |  ||||| ||| ||||||||  ||| ||||||||||||||||    
T  25551650 tttgcatatggaagacaagatttgttgcagccttgattttactttgaatgacttatttgttgagatagcta 25551720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 25551770 - 25551859
Alignment:
Q  132 aaattaaaatatttcatattttagtggatgtttgtctattgtttttatgtctactttttgaatcatatgcattatgcattataaatagaat 222  Q
    ||||||||||||| |||||||||||  |||||||||||| | ||||||| ||   |||||||  ||||||||||||||  || ||||||||    
T  25551770 aaattaaaatattacatattttagtaaatgtttgtctatcgattttatg-cttagttttgaactatatgcattatgcaccatgaatagaat 25551859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University