View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12879_low_33 (Length: 250)
Name: NF12879_low_33
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_33 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 32704823 - 32705075
Alignment:
| Q |
1 |
tgattcaattttatgcggtttaacttaaatcggtttttgaatatccaaattacgatgttgttnnnnnnnntctattaaaataaatattataaagatagcg |
100 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
32704823 |
tgattcaattttatgaggtttaactttaatcggtttttggatatccaaattacgatgttgttaaaaaaatt-tattaaaataaatattataaagatagcg |
32704921 |
T |
|
| Q |
101 |
taaagtcataattttgatgcaaaatatagt--atataacatactaaaaattgataattaggaatgaaaatataacatcaaatatatggccatctttc--- |
195 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32704922 |
taaagtcatagttttgatgcaaaatatagtgtatataacatactaaaaattgataattaggaatgaaaatataacatcaaatatatggccatctttcgtt |
32705021 |
T |
|
| Q |
196 |
---------gtgtatttatttcaatcttctaatgaaatgatgtccttccctttg |
240 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32705022 |
atgtcaaaggtgtatttagttcaatcttctaatgaaatgatgtccttccctttg |
32705075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 10484093 - 10484130
Alignment:
| Q |
12 |
tatgcggtttaacttaaatcggtttttgaatatccaaa |
49 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
10484093 |
tatgcggtttaatttaaatcggattttgaatatccaaa |
10484130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 16898984 - 16899032
Alignment:
| Q |
5 |
tcaattttatgcggtttaacttaaatcggtttttgaatatccaaattac |
53 |
Q |
| |
|
||||||| ||||||||||| ||||||| ||||||| ||| ||||||||| |
|
|
| T |
16898984 |
tcaatttaatgcggtttaatttaaatcagtttttggataaccaaattac |
16899032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University