View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_34 (Length: 246)
Name: NF12879_low_34
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 2272775 - 2272552
Alignment:
| Q |
1 |
gaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaaacattattca |
100 |
Q |
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| T |
2272775 |
gaaaagctagacaattcaaattaataaactgatatgaacatcaacatatattcactttgtcttggacacgaacattaagtctgtccttaagcattattca |
2272676 |
T |
|
| Q |
101 |
ttcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272675 |
ttcttctgctatttatgaaaaagaatggtaaaattagacaccgagccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatt |
2272576 |
T |
|
| Q |
201 |
tccaccgtcaattcaataattata |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2272575 |
tccaccgtcaattcaataattata |
2272552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 40772478 - 40772527
Alignment:
| Q |
170 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataa |
219 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataa |
40772527 |
T |
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