View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_35 (Length: 241)
Name: NF12879_low_35
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 16068268 - 16068492
Alignment:
| Q |
18 |
actaagatgtcatagaactttagtattattgttgatcctgtttgtcagtcacctaatgctctggtcagctatctcaattgaaaatatttcctttttgaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
16068268 |
actaagatgtcatagaactttagtattattgttgatcctgtttgtcagtcacataatgctctggtcagctatctcaattggaaatatttcctttttgaaa |
16068367 |
T |
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| Q |
118 |
catttattgaatattttttatgattgtgtatcaacaaacnnnnnnnnngggttgtagnnnnnnnccggaagaggttccgatttaatttgagaaacgg-aa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |||||||||||||| || |
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| T |
16068368 |
catttattgaatattttttatgattgtgtatcaacaaactttttttttgggttgtagtttttttccggaagaggttctgattcaatttgagaaacggaaa |
16068467 |
T |
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| Q |
217 |
aaaacgtcaattattttaatggatc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
16068468 |
aaaacgtcaattattttaatggatc |
16068492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 16066099 - 16066158
Alignment:
| Q |
183 |
cggaagaggttccgatttaatttgagaaacggaaaaa-acgtcaattattttaatggatc |
241 |
Q |
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| T |
16066099 |
cggaagaggtttcgattcaatttgagaaacggaaaaagatgtcaattcttttaatggatc |
16066158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 36542676 - 36542548
Alignment:
| Q |
17 |
cactaagatgtcatagaactttagtattattgttgatcctgtttgtcagtcacctaatgctctggtcagctatctcaattgaaaatatttcctttttgaa |
116 |
Q |
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||||||||| |||| |||||||||||||||| | |||||| ||| |||| |||||| ||||||||||||||| ||||||||| ||||||||| || |
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| T |
36542676 |
cactaagatatcatgaaactttagtattattg---accctgttattcattcacaaaatgctttggtcagctatctcatttgaaaatagttcctttttcaa |
36542580 |
T |
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| Q |
117 |
acatttattgaatattttttatgattgtgtat |
148 |
Q |
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| T |
36542579 |
acattttttgaatattttttacaattgtgtat |
36542548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 36565647 - 36565775
Alignment:
| Q |
17 |
cactaagatgtcatagaactttagtattattgttgatcctgtttgtcagtcacctaatgctctggtcagctatctcaattgaaaatatttcctttttgaa |
116 |
Q |
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||||||||| |||| |||||||||||||||| | |||||| ||| |||| |||||| ||||||||||||||| ||| ||||| ||||||||| || |
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| T |
36565647 |
cactaagatatcatgaaactttagtattattg---accctgttattcattcacaaaatgctttggtcagctatctcatttggaaatagttcctttttcaa |
36565743 |
T |
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| Q |
117 |
acatttattgaatattttttatgattgtgtat |
148 |
Q |
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|||||| |||||||||||||| |||||||||| |
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| T |
36565744 |
acattttttgaatattttttacgattgtgtat |
36565775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 20644735 - 20644775
Alignment:
| Q |
201 |
aatttgagaaacggaaaaa-acgtcaattattttaatggat |
240 |
Q |
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| T |
20644735 |
aatttgagaaacggaaaaagacgtcaattattttaatggat |
20644775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 3174636 - 3174696
Alignment:
| Q |
182 |
ccggaagaggttccgatttaatttgagaaacggaaaaa-acgtcaattattttaatggatc |
241 |
Q |
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| T |
3174636 |
ccggaagagatttcggttcaatttgagaaatggaaaaagacgtcaattattttagtggatc |
3174696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 3944261 - 3944301
Alignment:
| Q |
201 |
aatttgagaaacggaaaaa-acgtcaattattttaatggat |
240 |
Q |
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| T |
3944261 |
aatttgagaaacggaaaaagacgtcaattattttaatggat |
3944301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Complemental strand, 4022948 - 4022908
Alignment:
| Q |
201 |
aatttgagaaacggaaaaa-acgtcaattattttaatggat |
240 |
Q |
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| T |
4022948 |
aatttgagaaacgaaaaaagacgtcaattattttaatggat |
4022908 |
T |
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