View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12879_low_36 (Length: 239)

Name: NF12879_low_36

Description: NF12879

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12879_low_36

[»] chr6 (2 HSPs)

Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 175; E-Value: 2e-94

Query Start/End: Original strand, 24 - 239

Target Start/End: Complemental strand, 33635561 - 33635346

Alignment:

Q	24	tcacaatgttactacgattttatcaaactcagtgtcaatctaaacatgcatttaagtttgtttttattggttaccatagtacgcattagnnnnnnnnnnn	123	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33635561	tcacaatgttactacgattttatcaaactcagtgtcaatctaaacatgcatttaagtttgtttttattggttaccatagtacgcattagtttttttttta	33635462	T

Q	124	atattatatataagatatacacctcattctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaa	223	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33635461	ttactatatataagatatacacctcattctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaa	33635362	T

Q	224	atggaagggcaaagcc	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33635361	atggaagggcaaagcc	33635346	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2

Raw Score: 56; E-Value: 2e-23

Query Start/End: Original strand, 133 - 227

Target Start/End: Complemental strand, 33650601 - 33650506

Alignment:

Q	133	ataagatatacacctcattctaacttgtgtttgtgtggcattgcagcttccta-cttgaaatcatggaccctattcaacaaacaaaagaaaaatgg	227	Q
		\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	33650601	ataagatatataaatcatcctaacttgtgtttgtgaggcattgcaacttcctaacttgaaatcatgaacactattcaacaaacaaaagaaaaatgg	33650506	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]