View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_6 (Length: 593)
Name: NF12879_low_6
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 304 - 575
Target Start/End: Complemental strand, 31037022 - 31036744
Alignment:
| Q |
304 |
aaggcaccacacaagctttaagaaacttgaccaatccttaatgtcacataatccaactttgtctcggcttctctatatacttttacacgatacaacattc |
403 |
Q |
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| T |
31037022 |
aaggtaccacacaagctttaagaaacttgaccaaaccttaatgtcaaataatccaactttgtctcagcttctctatatacttttacacgatacaaccttc |
31036923 |
T |
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| Q |
404 |
tctatgtacgatcctttccattcac-------cagcccgccattagaccttacaccaacgcc-ttaccatcaaacgcatttgatgagtcctggtcccaaa |
495 |
Q |
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| T |
31036922 |
tctgtatacgattttttccattcactggccctcggccctccattagaccatacgccaacgcctttgccatccagcgcatttgatgagtcctggtcccaaa |
31036823 |
T |
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| Q |
496 |
ttattttgagatgctactattgctccaacatgatgatacaaaatatctgactaagtggccaagatgaacaagcaactttc |
575 |
Q |
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| T |
31036822 |
tt-gtttgagatgctactattgctccaacgtgagaatacaaaatttctgactaagtggctaagatgaacaagcaactttc |
31036744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 31037151 - 31037093
Alignment:
| Q |
70 |
gtatagttatctttaagaaggaagaaaatagagctgagtgagaatgttcaaaaaggaat |
128 |
Q |
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| T |
31037151 |
gtattgttatctttaagaaggaagaaaatagagctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 275
Target Start/End: Complemental strand, 31074289 - 31074219
Alignment:
| Q |
205 |
tgatgtatgctcaaaagaaacttgattcaatttcaatactagtgctcgaaatacttcggttgtctaatgtt |
275 |
Q |
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| T |
31074289 |
tgatgtgtgctcaaaagaaacttaatttaatttcaataccaatgctcaaaataattcgattctctaatgtt |
31074219 |
T |
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