View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12879_low_8 (Length: 431)
Name: NF12879_low_8
Description: NF12879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12879_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 5e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 133 - 320
Target Start/End: Complemental strand, 45403464 - 45403277
Alignment:
| Q |
133 |
attcagggaaatgaagaggagacttactgatatatccatctctgaggccaccaaacttctcctatccagcagtatcccaacagtagaagcaaatcttgtc |
232 |
Q |
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| T |
45403464 |
attcagggaaatgaagaggagacttactaatatatccatctctgaggccaccaaacttctcctatccagcagtatcccaacagtagaagcaaatcttgcc |
45403365 |
T |
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| Q |
233 |
gtagtttgtgaagacatccaatggatgcacttccacaccaatgtttgttgcttaccaccaaatcaaaacaacaaatacatcacttaaa |
320 |
Q |
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| T |
45403364 |
gtagtttgtgaagacatccaatggatgcacttccacaccaatgtttgttgcttaccaccaaatcaaaacaacaaatacatcacttaaa |
45403277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 274
Target Start/End: Original strand, 49686160 - 49686345
Alignment:
| Q |
87 |
gacacaaaaacttgagagcacaattaaacaggagggagctaacaatattcagggaaatgaagaggagacttactgatatatccatctctgaggccaccaa |
186 |
Q |
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| T |
49686160 |
gacaaaaaaaattgagagcacaactaaacaagagcgaggtaacgatattcaacgaaatgaagaggagacttactagtat--ccatctctgaggccaccaa |
49686257 |
T |
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| Q |
187 |
acttctcctatccagcagtatcccaacagtagaagcaaatcttgtcgtagtttgtgaagacatccaatggatgcacttccacaccaat |
274 |
Q |
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| T |
49686258 |
acttctcttgtccagcagtatcccagcagtagaaccgaatctttccgcagtttgtgaagaaatccaatggatgcacttccacaccaat |
49686345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 141 - 274
Target Start/End: Original strand, 49691737 - 49691868
Alignment:
| Q |
141 |
aaatgaagaggagacttactgatatatccatctctgaggccaccaaacttctcctatccagcagtatcccaacagtagaagcaaatcttgtcgtagtttg |
240 |
Q |
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| T |
49691737 |
aaatgaagaggaaacttactagtat--ccatctctgaggccaccaaacttctcttgtccagcagtatcccagcagtagaagcgaatcttgccgcagtttg |
49691834 |
T |
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| Q |
241 |
tgaagacatccaatggatgcacttccacaccaat |
274 |
Q |
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| T |
49691835 |
tgaagaaatccaatggatgcacttccacaccaat |
49691868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 165 - 274
Target Start/End: Original strand, 49696898 - 49697007
Alignment:
| Q |
165 |
tatccatctctgaggccaccaaacttctcctatccagcagtatcccaacagtagaagcaaatcttgtcgtagtttgtgaagacatccaatggatgcactt |
264 |
Q |
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| T |
49696898 |
tatccatctctgagaccaccaaacttctcttgtccagcagtatcccagcagtagaagcgaatcttgccgcagtttgtgaagaaatccaatggatgcactt |
49696997 |
T |
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| Q |
265 |
ccacaccaat |
274 |
Q |
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| T |
49696998 |
ccacaccaat |
49697007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 49686012 - 49686059
Alignment:
| Q |
25 |
agcagaagtaaactcaaattgattcttagagttaaaaacaacgcattc |
72 |
Q |
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| T |
49686012 |
agcagaagtaaactgaaattgatttttagagttagaaacaacgcattc |
49686059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Original strand, 49691965 - 49692002
Alignment:
| Q |
387 |
taaattaaaaataaatcttacgttcatatttcttctca |
424 |
Q |
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| T |
49691965 |
taaattaaaaaggaatcttacgttcatatttcttctca |
49692002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 149
Target Start/End: Original strand, 49696534 - 49696593
Alignment:
| Q |
89 |
cacaaaaacttgagagcacaattaaacaggagggagctaacaatattcagggaaatgaaga |
149 |
Q |
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| T |
49696534 |
cacacaaacttgagagcacaa-taaacaggagcaagctaactatattcaagcaaatgaaga |
49696593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 8835359 - 8835455
Alignment:
| Q |
18 |
acatgcaagcagaagtaaactcaaattgattcttagagttaaaaacaacgcattcaatttatcaaagatgacacaaaaacttgagagcacaattaaa |
114 |
Q |
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| T |
8835359 |
acatgcaagcagaactaaactcaaattaattcttagagttaaaaataacgcattcaatttatcaaagatcacacaaaaacttgagagcacaattaaa |
8835455 |
T |
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