View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1288-Insertion-1 (Length: 901)
Name: NF1288-Insertion-1
Description: NF1288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1288-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 816; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 816; E-Value: 0
Query Start/End: Original strand, 8 - 901
Target Start/End: Complemental strand, 29839294 - 29838405
Alignment:
| Q |
8 |
acattacttgaaataaatcccctagatnnnnnnnnttcccttagaacagtattaagaaaactaatgaattttaggatggacgaaacagttgttacctcca |
107 |
Q |
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| T |
29839294 |
acattacttgaaataaatcccctagataaaaaaaattcccttagaacagtattaagaaaactaatgaattttaggatggacgaaacagttgttacctcca |
29839195 |
T |
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| Q |
108 |
tggaaaacatgagcataatattttgatggatgcattattccctagcgatgctaaatcaacggtttgcataatcgacataactttgcgataagataactaa |
207 |
Q |
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| T |
29839194 |
tggaaaacatgagcataatattatgatggatgcattattccctagcgatgctaaatcaacggtttgcataatcgacataactttgcgataagataactaa |
29839095 |
T |
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| Q |
208 |
ataaatttccatgttagggaagcagattagtttttagccactgaggaacaatgatacaaatgacacttgacgagtctatgcaaaagaaacatcaatacct |
307 |
Q |
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| T |
29839094 |
ataaatttccatgttagggaagcagattagtttttagccactgaggaacaatgatacaaatgacacttgacgagtctatgcaaaagaaacatcaatacct |
29838995 |
T |
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| Q |
308 |
gtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcctaaaatcaaagccagagtaataaacatcaaagga |
407 |
Q |
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| T |
29838994 |
gtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcctaaaatcaaagccagagtaataaacatcaaagga |
29838895 |
T |
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| Q |
408 |
atgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactg |
507 |
Q |
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| T |
29838894 |
atgaagaaggttatttagattaaacaatacaaaaatgggacaatccagatatgtacaaacctgagttctgcaggtagctgtggaagaacatgtttgactg |
29838795 |
T |
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| Q |
508 |
cgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctatcagtcgataccaaaagattaaatttcacattatcggatt |
607 |
Q |
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| T |
29838794 |
cgcaatccagatatccagaagcctttaagaagatatcaatagaagttcgtctgctttctattagtcgataccaaaagattaaatttcacattatcggatt |
29838695 |
T |
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| Q |
608 |
gtggcaaaatggaacnnnnnnnnnngaaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgta |
707 |
Q |
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| T |
29838694 |
gtggcaaaatggaacaaaaaaa----aaagaatatattaactacttttcagtttaatttgcctattgcgacaaattagcaattactagtcattaaatgta |
29838599 |
T |
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| Q |
708 |
catgcacgcatgcacgatcacagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacacgatttgcaa |
807 |
Q |
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| T |
29838598 |
catgcacgcatgcacgatcacagaagcacacagaagaaacaagatcatttgataatgtcaagttattacgcggttgtcaccatttatacgcgatttgcaa |
29838499 |
T |
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| Q |
808 |
gcatttaccaatcattttgtagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaa |
901 |
Q |
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| T |
29838498 |
gcatttaccaatctttttgtagtattacttggtacataccatctgatactctctgctgatgaccgtcactggatgatcttggaagcagcagcaa |
29838405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 300 - 381
Target Start/End: Original strand, 34627277 - 34627358
Alignment:
| Q |
300 |
caatacctgtcctaaagcttgtagagagagtgctcggagaactccttccgctaggtcaactggtaagtttctcctaaaatca |
381 |
Q |
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| T |
34627277 |
caatacctgtcccaatgcttgtagacagagcgcacgaagaactccttctgcaaggtctactggtaaatttctcctaaaatca |
34627358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 34627445 - 34627526
Alignment:
| Q |
465 |
aacctgagttctgcaggtagctgtggaagaacatgtttgactgcgcaatccagatatccagaagcctttaagaagatatcaa |
546 |
Q |
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|||||||| || ||||| | ||||||||||||||| |||| || || || ||||| ||| |||||||||||||||||||| |
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| T |
34627445 |
aacctgagctcagcaggcaactgtggaagaacatgcctgacagcacagtcaagatacccaccagcctttaagaagatatcaa |
34627526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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