View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12880_low_2 (Length: 511)
Name: NF12880_low_2
Description: NF12880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12880_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 28291389 - 28290914
Alignment:
| Q |
19 |
tttatcaccatgcaaaatctgaaccaactaggtcgtgcatcattctaaccatcttcacctgtgttatgttatctttctagcaggtttcatttagtctgtt |
118 |
Q |
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| T |
28291389 |
tttatcaccatgcaaaatctgaaccaactaggtcgtgcatcattctaaccatcttcacctgtgttatgttatctttctagcaggtttcatttagtctgtt |
28291290 |
T |
|
| Q |
119 |
tatcttatgtgtcagttgctttttcaacaaccgtttattaaacacgcatttatattttgttttcttgaagtgtttgtttgtaacatgggagtgttgtaat |
218 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28291289 |
tatcttatgtgtcagtggctttttcaacaaccgtttattaaacacgcatttatattttgttttcttgaagtgtttgtttgtaacatgtgagtgttgtaat |
28291190 |
T |
|
| Q |
219 |
tccttagatatttaacacattagatattggcctgataaaagtttgaacgatgaggaatcctccttaaaggctaaaggcaattagaatattggtcaactgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28291189 |
tccttagatatttaacacattagatattggcctgataaaagtttgaacgatgaggaatcctccttaaaggctaaaggcaattagaatatcggtcaactgt |
28291090 |
T |
|
| Q |
319 |
agtcatgattgtagttatacatgctcaatagctttatagttactccttgattattacctatgcactaacataacctaaacacatcagttctcccaaagca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28291089 |
agtcatgattgtagttatacatgctcaatagctttatagttactccttgattattacctatgcactaacataacctaagcacatcagttctcccaaagca |
28290990 |
T |
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| Q |
419 |
cactttgtttctgttgtaatattctaacatattataacagtttcaacgagaacaaatgttgcaaactgatagtcag |
494 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28290989 |
cactttgtttctgttgtaatattccaacatattataacagtttcaacgagaacaaatgttgcaaactgatagtcag |
28290914 |
T |
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