View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12880_low_3 (Length: 501)
Name: NF12880_low_3
Description: NF12880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12880_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Original strand, 4555173 - 4555649
Alignment:
| Q |
1 |
gatggctcccagttacaattcagttaagaaggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatat |
100 |
Q |
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| T |
4555173 |
gatggctcccagttacaattcagttaagaaggacaccacagtaagcactagtaataaaactaagagtgccatgatgaaggaaagggatgaaaagtcatat |
4555272 |
T |
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| Q |
101 |
gtgaaattaacttcccaacaagtatggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctc |
200 |
Q |
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| T |
4555273 |
gtgaaattaacttcccaacaagtatggcagaaaagtggaagttgtccaaagggaacaatacctgttcgaagaatacgaaagagagagcttctcaaggctc |
4555372 |
T |
|
| Q |
201 |
catccattgatgaatttggaagaaagaaaccaagcttcagaaaagttaatcagcttaatcagaacgttgattcctttgtactgctaacaaatcactctgt |
300 |
Q |
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| T |
4555373 |
catccattgatgaatttggaagaaagaaaccaagcttcagaaaag---------ttaatcagaatgttgattcctttgtactgctaacaaatcactctgt |
4555463 |
T |
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| Q |
301 |
aagtttctatgcatgctacagctacaaaatgttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagac |
400 |
Q |
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| T |
4555464 |
aagtttctatgcatgctacagctaaaaaatgttggatcatgatttgacattatttctcaaacacaattttttattatacattatgctaattaaatcagac |
4555563 |
T |
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| Q |
401 |
gatttatattctgactttagaaaattgaattcaaaatctatactcgaaatgagtcgtctgatttttatctaattaacaatgatgtc |
486 |
Q |
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| T |
4555564 |
gatttatattctgactttagaaaattgaattcaaaatttatactcggaatgagtcgtctgatctttatctaattaacaataatgtc |
4555649 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 47947941 - 47947884
Alignment:
| Q |
124 |
atggcagaaaagtggaagttgtccaaaaggaacaatacctgttcgaagaatacgaaag |
181 |
Q |
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| T |
47947941 |
atggcagaaaagtggaagttgtccaaaagaaactgtacctattcgtagaattcgaaag |
47947884 |
T |
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