View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12880_low_4 (Length: 387)
Name: NF12880_low_4
Description: NF12880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12880_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 1104460 - 1104084
Alignment:
| Q |
1 |
cgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104460 |
cgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatac |
1104361 |
T |
|
| Q |
101 |
attttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104360 |
attttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcg |
1104261 |
T |
|
| Q |
201 |
ttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1104260 |
ttgacgcttctcaagtgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaat |
1104161 |
T |
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| Q |
301 |
tttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
377 |
Q |
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| T |
1104160 |
tttgtttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
1104084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 1087907 - 1087540
Alignment:
| Q |
1 |
cgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatac |
100 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||| ||| ||| | |
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| T |
1087907 |
cgcacacatccttgtgtccaatttgatgcgtcccaattttttggcgatttaggctcaaacccatctaaacattggcaaattggagactcgttatgaacgc |
1087808 |
T |
|
| Q |
101 |
attttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcg |
200 |
Q |
| |
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| ||||||||||| |||||| |||||||| |||||||||||||| |||| | |||| ||| |||||| || |||||||||||||| ||| || |
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| T |
1087807 |
aatttccataagggccacaacgattatagacatcacaatcatcttttggcaacgactcaataacactccaagtatcgtcttctggaatccaattaacacg |
1087708 |
T |
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| Q |
201 |
ttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaag |
300 |
Q |
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|| || | | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||||| | |
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| T |
1087707 |
ttcgcgatgactagttgtttggttcaaataagttattgaaacattactcttgtttacaagactatatatgtaataaacttcatttgaattgttcaccgac |
1087608 |
T |
|
| Q |
301 |
tttg---tttcgacaatttgagtaacagtcaccgcgggtgctccactaaatccaactccattccaagg |
365 |
Q |
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||| || | |||||| ||||||| || || | |||||||||||||||||||||||||||||||| |
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| T |
1087607 |
gttgtaattacaacaattgaagtaacaatctccacaggtgctccactaaatccaactccattccaagg |
1087540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 1047433 - 1047054
Alignment:
| Q |
1 |
cgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| ||| ||| | |
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| T |
1047433 |
cgcacacatccttgtgtccaatttgatgcgtcccaattttgtggtgatttaggctcaaacccatctaaacattgacaaattggagacgggttataaatgc |
1047334 |
T |
|
| Q |
101 |
attttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcg |
200 |
Q |
| |
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| |||||||| || |||||| |||||||| |||||||||||||| |||||||| |||| | | |||||| ||| || |||||| ||||| ||||||| |
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| T |
1047333 |
aatttccatatgggccacaatgattatagacatcacaatcatcttttggtactgactcaataccactccaagtattgtcctctggactccatataatgcg |
1047234 |
T |
|
| Q |
201 |
ttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaag |
300 |
Q |
| |
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|| | ||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||||||| |||||||||| | |
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| T |
1047233 |
ttcgtgaagactaagcgtttggttcaaataagttattgaaacattactcttgtttacaagactatatgagtaataaacctcatttgaattgttcacagat |
1047134 |
T |
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| Q |
301 |
tttgtttcgaca--atttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcctatg |
377 |
Q |
| |
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||| | ||| | |||| |||||| || || || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047133 |
cttgcaacaacaacagttgatgtaacaatctccataggcgctccactaaatccaactccattccaaggaccactcctatg |
1047054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 1072246 - 1071870
Alignment:
| Q |
1 |
cgcacacatccttgtgtccaattaaatgtgtcccaattttgtggcgatttaggttcaaacccttctaaacattgacaaattggagactcattaggaatac |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| || |||||||||||| |||||||| |||||||| ||||||||||| |||||||||||| ||| |||| | |
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| T |
1072246 |
cgcacacatccttgtgtccaatttgatgcgtaccaattttgtggtgatttaggctcaaacccatctaaacattggcaaattggagacgggttatgaatgc |
1072147 |
T |
|
| Q |
101 |
attttccataaggtccacaaggattataggcatcacaatcatctcttggtacttcctcataaaccctccaatcattatcttctggaatccatgtaatgcg |
200 |
Q |
| |
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| ||||||||||| || ||| |||||||| |||||||||||| | |||||||| || | | | |||||| || || |||||| ||||| ||| ||| |
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| T |
1072146 |
aatttccataagggccgcaacgattatagacatcacaatcattttttggtactgactgaatatcgctccaagtgttgtcctctggactccatataacgcg |
1072047 |
T |
|
| Q |
201 |
ttgacgcttctcaagtgtttggttcaaataagttattgaaaccacactcttgtttacaagactatatgtgtagtaaacttcatttgtattgttcacaaag |
300 |
Q |
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|| | | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||| |
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| T |
1072046 |
ttcatgaagactaagcgtttggttcaaataagttattgaaaccatactcttgtttacaagactatatgtgaaataaacttcatttgaattgatcacaggt |
1071947 |
T |
|
| Q |
301 |
tttgtttcgaca--atttga-gtaacagtcaccgcgggtgctccactaaatccaactccattccaaggaccactcct |
374 |
Q |
| |
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|||| | | | | |||| |||| | || || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1071946 |
gttgtagctataacacttgacgtaataatctccataggtgctccactaaatccaactccattccaaggaccactcct |
1071870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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