View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12881_high_1 (Length: 701)
Name: NF12881_high_1
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 9 - 698
Target Start/End: Original strand, 40093139 - 40093828
Alignment:
| Q |
9 |
ggacatcacgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaat |
108 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093139 |
ggacatcccgatcacagttctttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaat |
40093238 |
T |
|
| Q |
109 |
tatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaaccatatacacatcagaactatggagcnnnnnnngacacatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
40093239 |
tatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaaccatatacacatcagaactatggagctttttttgacacatgg |
40093338 |
T |
|
| Q |
209 |
ggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093339 |
ggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttc |
40093438 |
T |
|
| Q |
309 |
acttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtg |
408 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093439 |
acttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtg |
40093538 |
T |
|
| Q |
409 |
gaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgata |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093539 |
gaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgata |
40093638 |
T |
|
| Q |
509 |
taagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093639 |
taagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgct |
40093738 |
T |
|
| Q |
609 |
ccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggtaaatggcaaatgcatagggagatactgg |
698 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||| || |||| ||| |||||||| |
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| T |
40093739 |
ccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactgg |
40093828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 44 - 698
Target Start/End: Original strand, 40062517 - 40063197
Alignment:
| Q |
44 |
aaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttct |
143 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| ||||||| |
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|
| T |
40062517 |
aaattgatctgctgagtctaacagttggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttct |
40062616 |
T |
|
| Q |
144 |
ctcattactatatctaa-----catgaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattg |
238 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| |
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| T |
40062617 |
ctcattactatatctaagctaacatgaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattg |
40062716 |
T |
|
| Q |
239 |
aaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact------------a |
326 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| | |
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|
| T |
40062717 |
aaaggtttgaagaatggcaacaacactcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagacta |
40062816 |
T |
|
| Q |
327 |
tttattagtcttac---------atagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccg |
417 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
40062817 |
tttattagtcttaatggagattgattgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccg |
40062916 |
T |
|
| Q |
418 |
gagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatg |
517 |
Q |
| |
|
|| ||||| ||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
40062917 |
aaggttggaactcacagtctactttccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatg |
40063016 |
T |
|
| Q |
518 |
gaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggc |
617 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
40063017 |
gaatttcaaattaaaagaatgccactatatgaaaaatgttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggc |
40063116 |
T |
|
| Q |
618 |
agtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggtaaatggcaaatgcatagggagatactgg |
698 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || |||| ||| |||||||| |
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|
| T |
40063117 |
agtaatccagttgcgattgacttcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactgg |
40063197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 111 - 698
Target Start/End: Original strand, 40080933 - 40081548
Alignment:
| Q |
111 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
205 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
206 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
305 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
306 |
ttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggagttaattcttttgatacaggttggcctaaaa |
383 |
Q |
| |
|
|| | |||| ||||||| ||||||||||| |||| |||| |||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggagttaattttttcgatacagattggcctaaaa |
40081232 |
T |
|
| Q |
384 |
ggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaat |
483 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||||||| ||| || |
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|
| T |
40081233 |
ggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagttttat |
40081332 |
T |
|
| Q |
484 |
tttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatg-ttttttgctactaaccaatgtcatgca |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
40081333 |
tttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaatgtttttttgctactaaccaatgtaataca |
40081432 |
T |
|
| Q |
583 |
tgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggtaaatggcaaatg |
682 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || | |
|
|
| T |
40081433 |
tgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggtgaggcttgggtaaatggacaaag |
40081532 |
T |
|
| Q |
683 |
catagggagatactgg |
698 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
40081533 |
cattgggcgatactgg |
40081548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 40080826 - 40080912
Alignment:
| Q |
29 |
tttctggaaagaataaaattgatctgctgagtttaacagttggacttcaggttcagcttttcttgtttttagtttccaattatgcat |
115 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
40080826 |
tttccggaaagaacaaaattgatctactgagtttaacagttggacttcaggttcagcttttcttgtttttagtttctaaatatgcat |
40080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 670
Target Start/End: Complemental strand, 22012756 - 22012677
Alignment:
| Q |
591 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggt |
670 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| | |||||| |
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|
| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggt |
22012677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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