View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12881_high_19 (Length: 330)
Name: NF12881_high_19
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 2006296 - 2006608
Alignment:
| Q |
17 |
gtttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2006296 |
gtttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgc |
2006395 |
T |
|
| Q |
117 |
tcctacacctttagatcaatatttactatatcaaatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2006396 |
tcctacacctttagatcaatatttactatatcaaatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggag |
2006495 |
T |
|
| Q |
217 |
atgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaaccgagttaaagtctctctaacagtacatgatcccactgttccattcct |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2006496 |
atgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgttccattcct |
2006595 |
T |
|
| Q |
317 |
tcctatgctactc |
329 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
2006596 |
tcctcggctactc |
2006608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 128 - 317
Target Start/End: Complemental strand, 1743975 - 1743786
Alignment:
| Q |
128 |
tagatcaatatttactatatcaaatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggag |
227 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||||||| |
|
|
| T |
1743975 |
tagatcaacatttattatatcaaatatgttattgaaagattttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggag |
1743876 |
T |
|
| Q |
228 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccgagttaaagtctctctaacagtacatgatcccactgttccattcctt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| ||||| |||||||| ||||| ||| ||||||| |
|
|
| T |
1743875 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccaagtgaaattttctttaacaatacatgattccactattctattcctt |
1743786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 1498231 - 1498300
Alignment:
| Q |
200 |
attccttggccaaggagatgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaac |
269 |
Q |
| |
|
||||||||||||| || | ||||| ||||||||| |||||| ||||||||||||| || ||||| |||| |
|
|
| T |
1498231 |
attccttggccaaagaagtaatttgaagtctgtttttatggtttgcaagaaattccattacattaaaaac |
1498300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 25419916 - 25419804
Alignment:
| Q |
19 |
ttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25419916 |
ttagaggtggctcattccaaagaaggaatctatgttttccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctc |
25419817 |
T |
|
| Q |
119 |
ctacacctttaga |
131 |
Q |
| |
|
||||||||||||| |
|
|
| T |
25419816 |
ctacacctttaga |
25419804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 5373627 - 5373518
Alignment:
| Q |
23 |
aggtggctcattccaaagaaggaatctctatttcccaaagaaaatactgcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctac |
122 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||| || |||||||| || | || |||||||| |||||||||||| |||||||||| ||| || |||| |
|
|
| T |
5373627 |
aggttgctcattctaaagaaggagtctctatttcacagagaaaatattgtcttgatttgcttgaatcctcaggtcttctaggtgccaaacctacttctac |
5373528 |
T |
|
| Q |
123 |
acctttagat |
132 |
Q |
| |
|
|||| ||||| |
|
|
| T |
5373527 |
acctctagat |
5373518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 33461238 - 33461290
Alignment:
| Q |
19 |
ttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactg |
71 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
33461238 |
ttagaggttgctcattccaaagaggggatctctatttctcaaagaaagtactg |
33461290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34825395 - 34825447
Alignment:
| Q |
19 |
ttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactg |
71 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
34825395 |
ttagaggttgctcattccaaagaggggatctctatttctcaaagaaagtactg |
34825447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 2998101 - 2998147
Alignment:
| Q |
19 |
ttagaggtggctcattccaaagaaggaatctctatttcccaaagaaa |
65 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
2998101 |
ttagaggttgctcattccaaagaagggatctctatttctcaaagaaa |
2998147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 37193675 - 37193727
Alignment:
| Q |
19 |
ttagaggtggctcattccaaagaaggaatctctatttcccaaagaaaatactg |
71 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||||||| |||||||| ||||| |
|
|
| T |
37193675 |
ttagaggttgctcattccaaagaggggatctctatttctcaaagaaagtactg |
37193727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 269
Target Start/End: Original strand, 44577331 - 44577455
Alignment:
| Q |
150 |
aatatgttagtgaaagatttt-cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttc----tatggtctg |
244 |
Q |
| |
|
||||||||||||||| |||| ||| ||||||| | ||||||| |||| | ||||||| | ||| || |||||||||||| |||||| ||| ||||| |
|
|
| T |
44577331 |
aatatgttagtgaaatttttttcctgaagaatgctaggaatcagtcttcaaattccttagacaaagacatgatttggagtttgtttcaatatattgtctg |
44577430 |
T |
|
| Q |
245 |
caagaaattcctttccattacaaac |
269 |
Q |
| |
|
|||| ||||| ||| |||||||||| |
|
|
| T |
44577431 |
caagcaattcgtttacattacaaac |
44577455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University