View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_25 (Length: 250)
Name: NF12881_high_25
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38312227 - 38311992
Alignment:
| Q |
1 |
ctctttctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaat |
100 |
Q |
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| T |
38312227 |
ctctttctttcaaccatcttcttacagttttaggtcctgaacaagttgtgctgctgccaacagcagcagttgctcttccaccattagataatgggtgaat |
38312128 |
T |
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| Q |
101 |
ggaattgttttctcaagaaatatatagtgtgtgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaactgattatatatgttgacaaca |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38312127 |
ggaattgttttctcaagaaatatatagtgtgcgacttattagaaaaagctaatagagttgctcgtagcttagtaaaaattgattatatatgttgacaaca |
38312028 |
T |
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| Q |
201 |
tcgtcaaattgatctgaatgacaaattggtggactc |
236 |
Q |
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| T |
38312027 |
tcgtcaaattgatctgaatgacaaattggtggactc |
38311992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 38268420 - 38268316
Alignment:
| Q |
6 |
tctttcaaccatcttcttacagttttaggtcctgaacaagtcgtgctgctgccaacagcagcagtttctcttccaccattagataatgggtgaatggaat |
105 |
Q |
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| T |
38268420 |
tctttcaaccaccttcctacagttttaggtcctgaacaagccgtgccgttgccaacaccggcacttgctcttccaccattgaataatgggtgaatggaat |
38268321 |
T |
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| Q |
106 |
tgttt |
110 |
Q |
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||||| |
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| T |
38268320 |
tgttt |
38268316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 38268246 - 38268167
Alignment:
| Q |
150 |
taatagagttgctcgtagcttagtaaaaactgattatatatgttgacaacatcgtcaaattgatctgaatgacaaattgg |
229 |
Q |
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| T |
38268246 |
taatagagttgttcatagcgtagtaaaaatttattgtaaaccttgacaacatcgtcaaattcatctgaatgagaaattgg |
38268167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 31707668 - 31707711
Alignment:
| Q |
2 |
tctttctttcaaccatcttcttacagttttaggtcctgaacaag |
45 |
Q |
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| T |
31707668 |
tctttctttcaaccatcttcctactgttttaggtcctgaacaag |
31707711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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