View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_28 (Length: 241)
Name: NF12881_high_28
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 31087806 - 31088028
Alignment:
| Q |
1 |
atacttatttaacattacaaaatctatatccactcaataatttaatctagtgctttatcttctaaactaaaacatgaatcttcaagatatgaaaagcaag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
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| T |
31087806 |
atacttatttaacattacaaaatctacatccactcaataatttaatctagtgctttatgttctaaactaaaacatgaatcttcaatatatgaaatgcaag |
31087905 |
T |
|
| Q |
101 |
ctttttgttattgtgcatggtgggaattaattaaaagaagtactaaataataagagaggtgtagaacataaatagaggtttgccaactaatctttacatt |
200 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31087906 |
ctttttgtaattgtgcatggtggaaattaattaaaagaagtactaaataataagagaggtgtagaacataaatagaggtttgccaactaatctttacatt |
31088005 |
T |
|
| Q |
201 |
tctcaagaaccctattctgcatt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
31088006 |
tctcaagaaccctattctgcatt |
31088028 |
T |
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