View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_29 (Length: 240)
Name: NF12881_high_29
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38312275 - 38312497
Alignment:
| Q |
1 |
tgctttagcttccattgtggccacaacatcagcctcgtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccata |
100 |
Q |
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| T |
38312275 |
tgctttagcttccattgtggccacaacagcagcctcgtcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccata |
38312374 |
T |
|
| Q |
101 |
ttagttacggtgcagtgtgttgaggctgccgaagcaatgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgtccattcaattt |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312375 |
ttagttacggtgcagtgtgttgaggctgccaaagcaatgtgagctaagtgttacaaccttgcttctgtggttagctcagctgcgaatgtccattcaattt |
38312474 |
T |
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| Q |
201 |
cacatgattgtatcgctactctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38312475 |
cacatgattgtatcgctactctt |
38312497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 38268539 - 38268690
Alignment:
| Q |
38 |
tcaacaccaatcaaggatgaaaagatagacaagacaaacatggatattgcttcggctgccatattagttacggtgcagtgtgttgaggctgccgaagcaa |
137 |
Q |
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||||||| || ||||||||| ||||| | ||||||| || ||| | ||||||||||||||| ||||| | | || ||||| |||||||||||||||| |
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| T |
38268539 |
tcaacacaaaacaaggatgagaagatggccaagacagacgtggctgttgcttcggctgccactctagttgccgcacaatgtgtggaggctgccgaagcaa |
38268638 |
T |
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| Q |
138 |
tgtgagctaagcgcgacaaccttgcttctgtggttagctcagctgcgaatgt |
189 |
Q |
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| T |
38268639 |
tgggagctgagcgcgaccaccttgcatcggtggtcagctcagctgtgaatgt |
38268690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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