View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_3 (Length: 657)
Name: NF12881_high_3
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 11 - 633
Target Start/End: Complemental strand, 43255951 - 43255329
Alignment:
| Q |
11 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255951 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43255852 |
T |
|
| Q |
111 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
43255851 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43255752 |
T |
|
| Q |
211 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255751 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43255652 |
T |
|
| Q |
311 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
43255651 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43255552 |
T |
|
| Q |
411 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattca |
510 |
Q |
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| T |
43255551 |
tcaaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaataattca |
43255452 |
T |
|
| Q |
511 |
gcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttgcttgcccatcccaat |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43255451 |
gcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagttttccctttctcatgaaaggttccttttgttacttgcttgcccctcccaat |
43255352 |
T |
|
| Q |
611 |
ccaaattccatcctccttaccat |
633 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
43255351 |
ccaaattccatcctccttaccat |
43255329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 43259217 - 43258688
Alignment:
| Q |
11 |
cacagaagactccaagattggtacaatcctggttccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
110 |
Q |
| |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259217 |
cacagaagattccaagattggtacaatcctggctccatgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcatacc |
43259118 |
T |
|
| Q |
111 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
43259117 |
ctggtggacctatatttaaccctcttggttttggtaaagatgagaaatcattgaaggaattaaagctgaaggaagttaagaatggaaggttagcaatgtt |
43259018 |
T |
|
| Q |
211 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259017 |
ggcaatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttg |
43258918 |
T |
|
| Q |
311 |
accagtctcaagttccactaaatgaatgtattatatatatgctcttttcttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnc |
410 |
Q |
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| T |
43258917 |
accagtctcaagttccactaaatgaatgtattatatatatgctcctttattttctttgctcttgttggttgttgtaagttataattattaccaaaaaaac |
43258818 |
T |
|
| Q |
411 |
tcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtttcatgatatggccttgtaagaaatgacatttacaagaactagaataattca |
510 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43258817 |
tcaaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtttcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattca |
43258718 |
T |
|
| Q |
511 |
gcatctttgtgtgttaacttctttgttgca |
540 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
43258717 |
gcatctttgtgtgttaacttctttgttgca |
43258688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 47 - 350
Target Start/End: Complemental strand, 43247918 - 43247615
Alignment:
| Q |
47 |
atgggaaaacaatacttcttaggacttgagaaagggcttggaggttccggcgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
146 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247918 |
atgggaaaacaatactttttaggacttgagaaaggtcttggcggttccggtgaaccagcataccctggtggacctatatttaaccctcttggttttggta |
43247819 |
T |
|
| Q |
147 |
aagatgagaaatcattgaaagaattaaagctgaaggaagttaagaatggaagattagctatgttggcaatattgggttactttattcaagctcttgttac |
246 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
43247818 |
aagatgagaaatcattgaaggatttaaagctgaaggaagttaagaatggaaggttagctatgttggcaatattgggttactttgttcaagctctagttac |
43247719 |
T |
|
| Q |
247 |
aggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
346 |
Q |
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| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43247718 |
aagagttggaccataccaaaacttcttaaatcatttggctgacccttcaaacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatat |
43247619 |
T |
|
| Q |
347 |
atat |
350 |
Q |
| |
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|||| |
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|
| T |
43247618 |
atat |
43247615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 214 - 309
Target Start/End: Complemental strand, 43234059 - 43233964
Alignment:
| Q |
214 |
aatattgggttactttattcaagctcttgttacaggagttggaccataccaaaacctcttagatcatttggctgaccctgtcaacaacaacatctt |
309 |
Q |
| |
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|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
43234059 |
aatactgggtgactttgttcaatctcttgttacaggagttggaccataccaaaacctcttggatcatttggctgaccctttcaacaacaacatctt |
43233964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 43254144 - 43254090
Alignment:
| Q |
296 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
350 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254144 |
aacaacaacatcttgaccagtctcaagttccactaaatgaatgtattatatatat |
43254090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 478 - 540
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
478 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
540 |
Q |
| |
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||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
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| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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