View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_31 (Length: 239)
Name: NF12881_high_31
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_31 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 185017 - 185149
Alignment:
| Q |
104 |
ttatttgaatattgatttcaattatgttattccaatgtaacgtaactatgataattaagtttnnnnnnn--taatggtaagtattggttaaaataaatgt |
201 |
Q |
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| T |
185017 |
ttatttgaatattgctttcaattatgttattccaatgtaac-----tatgataattaagtttaaaaaaaaataatggtaagtattggttaaaataaatgt |
185111 |
T |
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| Q |
202 |
tgtatttaatagagtaatcaagtgtcacccaacacctc |
239 |
Q |
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| T |
185112 |
tgtatttaatagagaaatgaagtgtcacccaccacctc |
185149 |
T |
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