View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_high_37 (Length: 205)
Name: NF12881_high_37
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 1695357 - 1695496
Alignment:
| Q |
15 |
caaagggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccaca |
114 |
Q |
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| T |
1695357 |
caaaaggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccaca |
1695456 |
T |
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| Q |
115 |
tccttcttcttgataatcttatagaaagttggactgcaaa |
154 |
Q |
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| T |
1695457 |
tccttcttcttgataatcttatagaaagttggactgcaaa |
1695496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 1685030 - 1685168
Alignment:
| Q |
15 |
caaagggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccaca |
114 |
Q |
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| T |
1685030 |
caaaaggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcagcagagttgctaagtatggatgagacttgaactcctccaca |
1685129 |
T |
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| Q |
115 |
tccttcttcttgataatcttatagaaagttggactgcaa |
153 |
Q |
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| T |
1685130 |
tccttcttctttataatggtatagaaagttgggctgcaa |
1685168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 1700803 - 1700940
Alignment:
| Q |
16 |
aaagggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccacat |
115 |
Q |
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| T |
1700803 |
aaagtgctgtttgggtgcacaaaaggcattccataaaacacccaaaaagcacaattcaacaatgttgctaagtatggatctggtttgaactcttccacag |
1700902 |
T |
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| Q |
116 |
ccttcttcttgataatcttatagaaagttggactgcaa |
153 |
Q |
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| T |
1700903 |
acttcttctttataattccatagaaagttggactgcaa |
1700940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 1971510 - 1971648
Alignment:
| Q |
15 |
caaagggctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccaca |
114 |
Q |
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| T |
1971510 |
caaaaggctgtttgggtgcacaaaaggcattccataaaacacccaaaatgcacaattcagcagagttgctaagtatggatctggtttgaattcttccaca |
1971609 |
T |
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| Q |
115 |
tccttcttcttgataatcttatagaaagttggactgcaa |
153 |
Q |
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| T |
1971610 |
gacttcttcttgataattcaatagaaagttggattgcaa |
1971648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 1675667 - 1675804
Alignment:
| Q |
22 |
ctgtttgggtgcacaaaaggcattccatagaatacccaaaatgcacaattcaacaatgttgccaagtatggatcaggcttgaactcctccacatccttct |
121 |
Q |
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| T |
1675667 |
ctgtctgggtgcacaaaaggcaatccatggaatacccaaaatgcacaattcaacacaattgctatgtatgtatcagacttgaactcctccacatcccttt |
1675766 |
T |
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| Q |
122 |
tcttgataatcttatagaaagttggactgcaaaaatat |
159 |
Q |
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| T |
1675767 |
tctttataattttaaccaaagttggactacaataatat |
1675804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 1695510 - 1695546
Alignment:
| Q |
152 |
aaaaatataaccaaatgtctaataagtgtttatagtg |
188 |
Q |
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| T |
1695510 |
aaaaatataaccaaatgtctaataagtgtttatagtg |
1695546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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