View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_high_4 (Length: 654)

Name: NF12881_high_4
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_high_4
NF12881_high_4
[»] chr1 (1 HSPs)
chr1 (3-640)||(18008843-18009480)


Alignment Details
Target: chr1 (Bit Score: 586; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 3 - 640
Target Start/End: Complemental strand, 18009480 - 18008843
Alignment:
Q  3 caaatgaatctcttggagcatggtattctgataaccaaccagtttatccttctatttacgaagttttagagggatgtttacttcttgatcctgcttgttc 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||| |  |||||||||||||||||||||||||||| ||||||    
T  18009480 caaatgaatctcttggagtatggtattctgataaccaaccagttgatccttcaatttacgatgaattagagggatgtttacttcttgatcctgattgttc 18009381  T
Q  103 tggtaattgcgacgaaggtggacaatgcaatcatcttcttctgtttgatataatcattgacgggttattggatatttttggtagatcatatagttattat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||    
T  18009380 tggtaattgcgacgaaggtggacaatgcaatcatcttcttctgtttgatataatcaatgaagggttattggagatttttggtagatcatatagttattat 18009281  T
Q  203 cctaaacctttatcatctctatcttatgttcatcatttgcctactggaggaaataatgttctacataaagtatggaaacttattagttggtatcttacta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18009280 cctaaacctttatcatctctatcttatgttcatcatttgcctactggaggaaataatgttctacataaagtatggaaacttattagttggtatcttacta 18009181  T
Q  303 cttgtgatgaggcttatccatcattggattattatgttagtaaagatctagcaaaatatgatggatggatgaatctccaatttgattcagaatgtgtagg 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  18009180 cttgtgatgaggcttatccatcattggattattatgttagtaaagatctagcaaaacatgatggatggatgaatctccaatttgattctgaatgtgtagg 18009081  T
Q  403 gcttgagattgatgatttgatttttgattatctcttggaggaaattatctacacctaagttctgtatggtattaattaattttcttatactgctcattat 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18009080 gcttgagattgatgatttgatttttgattatctcttggaggaaattatctacacctaagttctgtatggtattaattaattttcttatactgctcattat 18008981  T
Q  503 gtggcaatttattttttggagcaaattttgatacattttgtggccaaattttgatgtaagagttaatgtagcttctagtttttatttttcccagctgaat 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18008980 gtggcaatttattttttggagcaaattttgatacattttgtggccaaattttgatgtaagagttaatgtagcttctagtttttctttttcccagctgaat 18008881  T
Q  603 tcttttatagaattctcttatataatttaagaaaatgt 640  Q
    ||||||||||||||||||||||||||||||||||||||    
T  18008880 tcttttatagaattctcttatataatttaagaaaatgt 18008843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University