View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_10 (Length: 546)
Name: NF12881_low_10
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 171 - 525
Target Start/End: Complemental strand, 27525252 - 27524897
Alignment:
| Q |
171 |
tataatgtggatgttttaattatatgctaattaaaatgaaaaaattaacttggaaactccattgtcannnnnnnggtggatttttatattcaattttagg |
270 |
Q |
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| T |
27525252 |
tataatgtggatgttttaattatatgctaattaaaatgaaaaaattaacttggaaactccattgtcatttttttggtggatttttatattcaattttagg |
27525153 |
T |
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| Q |
271 |
ggttatttaatatgaacccagtccagc-gtggatcctcctatttttttatgagtttcaataaaagaannnnnnnn-attcacaatttttattattataaa |
368 |
Q |
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| T |
27525152 |
ggttatttaatatgaacccggtccagccgtggatcctcctatttttttatgagtttcaataaaagaatttttttttattcacaatttttattattataaa |
27525053 |
T |
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| Q |
369 |
acttaattgttgctaaaaatgattaaggtccaactttagaccattttttagatgttcatattagacacaccctcaattttacaatgagttgagaaaaaca |
468 |
Q |
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| T |
27525052 |
acttacttgttgctaaaaatgattaaggtccaactttagaccattttttagatgttcatattagacacaccctcaattttacaatgagttgagaaaaaca |
27524953 |
T |
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| Q |
469 |
ttgtaagttttgtatatatttgatcatttccatacaatgattgaattaaacatggat |
525 |
Q |
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| T |
27524952 |
ttgtaag-tttgtatatatttgatcatttccatacaatgattgaattaaacatggat |
27524897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 27525382 - 27525265
Alignment:
| Q |
65 |
aacttcaattgtgaacaatgttctcatttctttatttattttttggtacaacaatgttctcatttctatttaagataaagtgtttttcttttaagtattt |
164 |
Q |
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| T |
27525382 |
aacttcaattgtgaacaatgttctaattttttt-----ttttttggtacaacaatgttctcatttctatttaagataaagtgtttttcttttaagtattt |
27525288 |
T |
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| Q |
165 |
ataccatataatgtggatgtttt |
187 |
Q |
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| T |
27525287 |
ataccatatgatgtggatgtttt |
27525265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 27525489 - 27525411
Alignment:
| Q |
1 |
catccatgagtacatttattctgatattattgatattgaacaatgtttgttaaattgagttttcaacttcaattgtgaa |
79 |
Q |
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| T |
27525489 |
catccatgagtacatttattctgatattattgatattgaacaatgtttgttaaattgagttttcaacttcaattgtgaa |
27525411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 25684795 - 25684831
Alignment:
| Q |
403 |
tttagaccattttttagatgttcatattagacacacc |
439 |
Q |
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| T |
25684795 |
tttagaccattttttaaaggttcatattagacacacc |
25684831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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