View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_11 (Length: 484)
Name: NF12881_low_11
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 3884733 - 3884283
Alignment:
| Q |
15 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
114 |
Q |
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| T |
3884733 |
cacagatcagagagtgaattggaagatgatgaacaacctattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
3884634 |
T |
|
| Q |
115 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
214 |
Q |
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| T |
3884633 |
cagcttttttagataagagcttcacaaggtttgatcgtaattggattcatagagttggtg-ttcttctggtggtattgttttcattcttattcttctctt |
3884535 |
T |
|
| Q |
215 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttgtgataaaactaagtgttgaatcttgaactt |
314 |
Q |
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| T |
3884534 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgcatgctcaaggaaggtttatgataaaactaagtgttgaatcttgaactt |
3884435 |
T |
|
| Q |
315 |
aagatgaatttatgttttaagctaattattgtctgctttcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagcaaaa |
414 |
Q |
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| T |
3884434 |
aagatgaatttatgttttaagctaattattgtctgcgctcaaagtacaatgtatttaagttaataaacttgatattttcatggtagaaatattagctaaa |
3884335 |
T |
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| Q |
415 |
tctattaagaacaattatcttttacaatctcaagtgaactaaaactattgtc |
466 |
Q |
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| T |
3884334 |
tctattaagaacaattatcttttacaatctcaagtgaactaaaactattgtc |
3884283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 3874205 - 3873957
Alignment:
| Q |
15 |
cacagatcagagagtgaattggaagatgatgaacaaccaattagtgttactttatggttaccaatgttgctttttgtattggttttagtcatatctttat |
114 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3874205 |
cacagatcagagagtgagttggaagatgatgaacaaccaattagtgttactttatggttaccaatgttactttttgtattggttttagtcatatctttat |
3874106 |
T |
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| Q |
115 |
cagnnnnnnnggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
214 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3874105 |
cagcttttttggataagagcttcacaaggtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctt |
3874006 |
T |
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| Q |
215 |
tcttgttttgaagtgtaaagcatctctgttgtaatgtaagaaccttgcatgc |
266 |
Q |
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| T |
3874005 |
tcttgttttgaagtgtaaagcatct---ttgtaatgtaagaaccttgcatgc |
3873957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 329 - 458
Target Start/End: Complemental strand, 3873352 - 3873218
Alignment:
| Q |
329 |
ttttaagctaattattgtctgctttcaaagtacaat-----gtatttaagttaataaacttgatattttcatggtagaaatattagcaaaatctattaag |
423 |
Q |
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|||||||||||||| ||||| |||| |||||||||| ||||||||| |||||||||| |||||||| ||||||||||||| | |||||||||| || |
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| T |
3873352 |
ttttaagctaattagtgtcttctttgaaagtacaataatgtgtatttaagctaataaacttcatattttcttggtagaaatatttgtaaaatctatttag |
3873253 |
T |
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| Q |
424 |
aacaattatcttttacaatctcaagtgaactaaaa |
458 |
Q |
| |
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| |||||||||||| |||| ||| ||||| |||| |
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| T |
3873252 |
agcaattatcttttcaaatcgcaattgaaccaaaa |
3873218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 239
Target Start/End: Complemental strand, 48453561 - 48453465
Alignment:
| Q |
143 |
gtttgatcgtaattggattcatagagttggtggttcttctggtggtattgttttcattcttattcttctctttcttgttttgaagtgtaaagcatct |
239 |
Q |
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|||||||||| | ||||||||||||||| |||| || || || |||||| || | ||| ||| | |||| |||||| |||||||||| ||| ||||| |
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| T |
48453561 |
gtttgatcgttactggattcatagagtttgtggctcctcaggcggtatttttgtgattattactgttctttttcttattttgaagtggaaatcatct |
48453465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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