View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_12 (Length: 470)
Name: NF12881_low_12
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 461
Target Start/End: Original strand, 42307252 - 42307697
Alignment:
| Q |
16 |
aaatctcatgtaagtgcatatatattttagattgtaaaatcacacacacatgtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacct |
115 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307252 |
aaatctcatgtaagtgcatacatattttagattgtaaaatcacacacacatgtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacct |
42307351 |
T |
|
| Q |
116 |
cggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307352 |
cggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcat |
42307451 |
T |
|
| Q |
216 |
gtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307452 |
gtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaatatttaaccatgatatactc |
42307551 |
T |
|
| Q |
316 |
tagtataaaacctatacacaattcatatatatgtttaacattgtaaaattaagcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42307552 |
tagtataaaacctatacacaattcatatatatgtttaacattgtaaaattatgcatatgatgcaaaaaggaattaaattacttttttcaacaaatctaat |
42307651 |
T |
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| Q |
416 |
gtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
461 |
Q |
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| T |
42307652 |
gtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
42307697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 51571027 - 51570874
Alignment:
| Q |
67 |
gtatagcatgcaaggaataaaactcaagaacaaatgtttcactctacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcga |
166 |
Q |
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||||| ||||||| ||| ||| |||| ||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||| |||| ||| || | |
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| T |
51571027 |
gtataacatgcaatgaacaaatctcatgaaaaaatgtttcactttacctcagtaaattgtagtaaatgaagacccaatgtacgctcgtcttcatgctcca |
51570928 |
T |
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| Q |
167 |
gcaccaaactcccattctgtcacaagttggtaaacaagatatgaagcatgtaaa |
220 |
Q |
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| T |
51570927 |
acaccaaattaccattctgtcacgagttggtaaacaagatatgaagcatataaa |
51570874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 461
Target Start/End: Complemental strand, 51570711 - 51570631
Alignment:
| Q |
378 |
caaaaaggaattaaattacttttttcaacaaatctaatgtcatcatcatggaaattagaaaaacttaccttttttagttcttct |
461 |
Q |
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||||||| |||||||||| |||| ||| || ||||||||||||| || |||||||||||| ||||||||||||||||||||| |
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| T |
51570711 |
caaaaagcaattaaattaacttttccaataattctaatgtcatca-ca--gaaattagaaaagcttaccttttttagttcttct |
51570631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 357
Target Start/End: Original strand, 47972050 - 47972293
Alignment:
| Q |
111 |
tacctcggtaaattgtagtaaatgaagagccaatgtacactcatctttatgatcgagcaccaaactcccattctgtcacaagttggtaaacaagatatga |
210 |
Q |
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|||||| |||||||| |||||||||||| ||||||||| |||||||| ||| || | ||||||| ||||| |||||||| | |||||||||||||||||| |
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| T |
47972050 |
tacctcagtaaattgaagtaaatgaagacccaatgtacgctcatcttcatgctccaacaccaaattcccagtctgtcacgaattggtaaacaagatatga |
47972149 |
T |
|
| Q |
211 |
agcatgtaaatttgcaccagttataaacacaaatgcagtattgaatcatatcacaatcacaatagatgactgcttaactgactaat--atttaaccatga |
308 |
Q |
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| T |
47972150 |
agcttaatattatacaaaag-tataaacacaaatgaattaatgagtcatattacaatcataatatatgagtgcttaattgactcatcaagtcaaccatga |
47972248 |
T |
|
| Q |
309 |
tatactctagtataaaacctatacacaattcatatatatgtttaacatt |
357 |
Q |
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| T |
47972249 |
tctactc----ataaaacctaggcataatacatgtatatgtttaacatt |
47972293 |
T |
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