View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_13 (Length: 461)
Name: NF12881_low_13
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 188 - 407
Target Start/End: Complemental strand, 8926340 - 8926113
Alignment:
| Q |
188 |
tatatatgcatgtttagaatcagagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcac--------a |
279 |
Q |
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| T |
8926340 |
tatatatgcatgtttagaatcaaagtgaacttaacgaggtgacacgacacatcgtgattctgtcaagttcaccgttaatctaaacatgcactgtattaaa |
8926241 |
T |
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| Q |
280 |
gagaaattttgatgatgtatagaactagcacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
379 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8926240 |
gagaaattttgatgatgtatagaactagtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgtt |
8926141 |
T |
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| Q |
380 |
aagcttccccatgtcaacaactggaaag |
407 |
Q |
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| T |
8926140 |
aagcttccccatgtcaacaactggaaag |
8926113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 8926523 - 8926393
Alignment:
| Q |
1 |
tgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatca |
100 |
Q |
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| T |
8926523 |
tgaacacactccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatca |
8926424 |
T |
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| Q |
101 |
actcaatagatatactatggttcacacactt |
131 |
Q |
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| T |
8926423 |
actcaatagatatactatggttcacacactt |
8926393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 55523263 - 55523146
Alignment:
| Q |
8 |
actccaaacctttgcttgctaccatttctttgaacctttgttccatacacttcttgtagtgttcttttgtgagcttctccactttgtccatcaactcaat |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| |||||||| ||||||||||| ||||| || |
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| T |
55523263 |
actctaaacctttgcttgctaccatttctttgaacctttgctccatacgcttcttgtagttttcttttgtcagcttctcaactttgtccatgaactctat |
55523164 |
T |
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| Q |
108 |
agatatactatggttcac |
125 |
Q |
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| T |
55523163 |
ggatatcccatggttcac |
55523146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 55522810 - 55522713
Alignment:
| Q |
309 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctcttctgtgttaagcttccccatgtcaacaactggaaa |
406 |
Q |
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| T |
55522810 |
acctcaaagaaaccccaattttcacaagcatcttttatgatctccatggttgatgctttctcttcagtgttaagattcttcatgtcaactactggaaa |
55522713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 370
Target Start/End: Complemental strand, 37628757 - 37628696
Alignment:
| Q |
309 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
370 |
Q |
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||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||| |
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| T |
37628757 |
acctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
37628696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 36872707 - 36872765
Alignment:
| Q |
309 |
acctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttct |
367 |
Q |
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| T |
36872707 |
acctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttct |
36872765 |
T |
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