View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_14 (Length: 449)
Name: NF12881_low_14
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_14 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: scaffold0021 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 152003 - 151572
Alignment:
| Q |
18 |
aagtattgtgtcaacttgtccaagttcctcattcaaatttgaagtacgggcataggccggtttatctgtttgggcgtagtacatgtgtatatcttgattg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
152003 |
aagtattgtgtcaacttgtccaagttcctcattcaaatttgaagtacgggcataggccggtttatctgtttgggcgtagtacatgtgtatatcttgattg |
151904 |
T |
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| Q |
118 |
atgaagatgctttgaagaactttgacaatttctattgatacatacaatgagatgggaatgaaaaaaccatataacattaaggctgtcaaaaaatgaaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151903 |
atgaagatgctttgaagaactttgacaatttctattgatacatacaatgagatgggaatgaaaaaaccatataacattaaggctgtcaaaaaatgaaaca |
151804 |
T |
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| Q |
218 |
aagcagcaacaaaaggtcttttaggatcaaagaaaattgtagaattgttcggtcttagataccatcttttaatcacaccgtcgtcgtcatctaagtcatc |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
151803 |
aagctgcaacaaaaggtcttttaggatcaaagaaaattgtagaattgttcggtcttagataccatctttttatcacaccgtcatcgtcatctaagtcatc |
151704 |
T |
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| Q |
318 |
tctagttgtaattccaaagaaagtagacccaatagctgccataaaaaataacatacaaaacaataagtagataatcttatccatcttcttctcaactttg |
417 |
Q |
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| T |
151703 |
tctagttgtaattccaaagaaagtagacccaatagctgccataaaaaataacatacaaaacaataagtagataatcttatccatcttcttctcaactttg |
151604 |
T |
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| Q |
418 |
cttctctttgaagaggggtcggtggaattttg |
449 |
Q |
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| T |
151603 |
cttctctttgaaggggggtcggtggaattttg |
151572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 29590757 - 29591026
Alignment:
| Q |
18 |
aagtattgtgtcaacttgtccaagttcctcattcaaatttgaagtacgggcataggccggtttatctgtttgggcgtagtacatgtgtatatcttgattg |
117 |
Q |
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|||||||||||||||||| || || ||||| ||||| |||||||| || |||| |||||||| |||| || ||||||||| || |||||||||||| |
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| T |
29590757 |
aagtattgtgtcaacttgaccgagctcctcgttcaagtttgaagtgcgagcatgtgccggtttgtctgcttccttgtagtacatatggatatcttgattg |
29590856 |
T |
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| Q |
118 |
atgaagatgctttgaagaactttgacaatttctattgatacatacaatgagatgggaatgaaaaaaccatataacattaaggctgtcaaaaaatgaaaca |
217 |
Q |
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||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||||||||| ||||||| | |
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| T |
29590857 |
atgaaaatgctctgaaggacttttacaatttctattgacacatacaaagagatgggaataaagaaaccatacaacattaaggctgtcaaacaatgaaata |
29590956 |
T |
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| Q |
218 |
aagcagcaacaaaaggtcttttaggatcaaagaaaattgtagaattgttcggtcttagataccatctttt |
287 |
Q |
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| T |
29590957 |
tagcagcagcagccggtctttttggatcaaagaaaattgtagagtcgtcaggccttaaataccatctttt |
29591026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 13707250 - 13707057
Alignment:
| Q |
22 |
attgtgtcaacttgtccaagttcctcattcaaatttgaagtacgggcataggccggtttatctgtttgggcgtagtacatgtgtatatcttgattgatga |
121 |
Q |
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| T |
13707250 |
attgtgtcaatttggccgagttcttcattcaagtttgaagtacgagcaagagccggtttgtccagttcttcatagtacatattaatatcttgattaatga |
13707151 |
T |
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| Q |
122 |
agatgctttgaagaactttgacaatttctattgatacatacaatgagatgggaatgaaaaaaccatataacattaaggctgtcaaaaaatgaaa |
215 |
Q |
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| T |
13707150 |
agatgctttgaaggactttaaccaattctattgagaaatacaaggagatgggaatgaagaagttgtatagcattaaggccgtcaagaaatgaaa |
13707057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 13706896 - 13706859
Alignment:
| Q |
382 |
aagtagataatcttatccatcttcttctcaactttgct |
419 |
Q |
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| T |
13706896 |
aagtagataatcttatccatcttcttctcgattttgct |
13706859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 46052585 - 46052779
Alignment:
| Q |
18 |
aagtattgtgtcaacttgtccaagttcctcattcaaatttgaagtacgggcataggccggtttatctgtttgggcgtagtacatgtgtatatcttgattg |
117 |
Q |
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|||||| || |||||||| |||||||| || |||||||| || ||||| |||| || || ||||| |||| | | ||||||| | |||||| ||| |
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| T |
46052585 |
aagtatggtatcaacttgaccaagttcttcgttcaaattcgatgtacgagcatgcgctggcttatcagtttcctcatgatacatgttcaaatcttggttg |
46052684 |
T |
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| Q |
118 |
atgaagatgctttgaagaactttgacaatttctattgatacatacaatgagatgggaatgaaaaaaccatataacattaaggctgtcaaaaaatg |
212 |
Q |
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| T |
46052685 |
atgaaaatgctttgaagaaccttcacaacttcaatggaaacatacaacgaaatcggaataaagtaaccatacaacatcaatgctgtcaagaaatg |
46052779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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