View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_15 (Length: 437)

Name: NF12881_low_15
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_15
NF12881_low_15
[»] chr3 (3 HSPs)
chr3 (1-422)||(51113896-51114317)
chr3 (19-146)||(514861-514988)
chr3 (120-160)||(27006006-27006046)
[»] chr4 (16 HSPs)
chr4 (19-170)||(55505238-55505389)
chr4 (25-174)||(640726-640875)
chr4 (19-174)||(546724-546879)
chr4 (19-153)||(1524616-1524750)
chr4 (19-146)||(12121590-12121717)
chr4 (19-174)||(553290-553445)
chr4 (19-139)||(1489494-1489614)
chr4 (19-139)||(1513537-1513657)
chr4 (19-161)||(1552903-1553045)
chr4 (19-155)||(1508136-1508272)
chr4 (19-139)||(1537900-1538020)
chr4 (19-146)||(1545612-1545739)
chr4 (19-170)||(6006142-6006293)
chr4 (19-161)||(1548557-1548699)
chr4 (33-164)||(570172-570303)
chr4 (19-59)||(1754445-1754485)
[»] chr8 (4 HSPs)
chr8 (16-160)||(27922333-27922477)
chr8 (19-174)||(32151112-32151267)
chr8 (19-146)||(5767788-5767915)
chr8 (19-168)||(17628147-17628296)
[»] chr2 (1 HSPs)
chr2 (1-144)||(45245200-45245343)
[»] chr6 (5 HSPs)
chr6 (30-146)||(28934888-28935004)
chr6 (95-174)||(9411166-9411245)
chr6 (19-59)||(6432087-6432127)
chr6 (1-57)||(6603317-6603373)
chr6 (19-79)||(14820599-14820659)
[»] chr1 (3 HSPs)
chr1 (30-146)||(9580908-9581024)
chr1 (19-58)||(7554415-7554454)
chr1 (116-170)||(43634012-43634066)
[»] chr5 (4 HSPs)
chr5 (19-146)||(41901668-41901795)
chr5 (19-160)||(32267300-32267441)
chr5 (21-61)||(12845517-12845557)
chr5 (19-79)||(38267689-38267749)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 51113896 - 51114317
Alignment:
Q  1 tgaaaaattgttaccatttcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgca 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  51113896 tgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgca 51113995  T
Q  101 tgctaattttgttgcctcaatgatattttcaaggccatcattgagagaaataacagctccacctggttttgattcaaccgagaaaatgaaattctacttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51113996 tgctaattttgttgcctcaatgatattttcaaggccatcattgagagaaataacagctccacctggttttgattcaagcgagaaaatgaaattctacttg 51114095  T
Q  201 agccacaactgctttgtttggtagctgtctgaaacatgaaacaactcttctgaagtataaactctgaaatgcaagttgtttgttgtttacggatttactt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  51114096 agccacaactgctttgtttggtagctgtctgaaacatgaaacaactctgctgaagtataaactctgaaatgcaagttgtttgttgattacggatttactt 51114195  T
Q  301 atatgagaaattaatttattttataaatgtcaacttacatatatgtatttagttacggatataacttatttatcccttttattatattatacgctagact 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  51114196 atatgagaaattaatttattttataaatgtcaacttacatatatgtatttagttacggatttaacttatttatcccttttattatattatatgctagact 51114295  T
Q  401 agatgtttttatttgtgtgtgt 422  Q
    ||||||||||||||||||||||    
T  51114296 agatgtttttatttgtgtgtgt 51114317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 514861 - 514988
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||| ||||||||||||||||||  |||| ||||||  |||  ||||||| |||||||  ||||||  ||||||||||  |||| |||||||| |    
T  514861 tcacagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcattataatgttgttgcccc 514960  T
Q  119 aatgatattttcaaggccatcattgaga 146  Q
    |||| |||||||||||||||||||||||    
T  514961 aatggtattttcaaggccatcattgaga 514988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 27006006 - 27006046
Alignment:
Q  120 atgatattttcaaggccatcattgagagaaataacagctcc 160  Q
    ||||||||||||||||||||| ||||| |||| ||||||||    
T  27006006 atgatattttcaaggccatcactgagaaaaattacagctcc 27006046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 55505238 - 55505389
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||||||||||||| || ||| ||||||| |||||| ||||| ||||||| || || || ||||||  |||||||||| ||| | |||||| |||    
T  55505238 tcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagtgttgttgactc 55505337  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggtttt 170  Q
    |||| ||||||||||||||||||||||| | |||||||| ||||||||||||    
T  55505338 aatggtattttcaaggccatcattgagaaagataacagcgccacctggtttt 55505389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 174
Target Start/End: Complemental strand, 640875 - 640726
Alignment:
Q  25 agaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgat 124  Q
    ||||||||||||| |||||||||||||| |||| | || || ||||| | |||||||||||||||  ||||||| |||||||| | |||| ||||||| |    
T  640875 agaagggagtgaatcatgtggtagaaaactgcaaagaattaagagaggtcaatttaaagggttgtaataaagtgaatgctaatgtcgttgactcaatggt 640776  T
Q  125 attttcaaggccatcattgagagaaataacagctccacctggttttgatt 174  Q
    |||||||||||||||||||||| | |||  | ||||||||||||||||||    
T  640775 attttcaaggccatcattgagaaagatagtaactccacctggttttgatt 640726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 546879 - 546724
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||| ||||||| || ||||  ||||||| ||| ||||   ||||| ||    
T  546879 tcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaatttaagggcttgtaataaagtgaatgttaatgccgttgcttc 546780  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggttttgatt 174  Q
    |||| |||||| |||||||||||||||| | |||| ||||||| ||||||| ||||    
T  546779 aatgttatttttaaggccatcattgagaaagataatagctccatctggtttggatt 546724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 1524616 - 1524750
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||| |||||||||  ||||| ||||||| |||||| ||||  ||||||||||||| | |||||||| |||||| |||||||  |||||||||||    
T  1524616 tcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttgaggggttgttgtaaagttcatgctagctttgttgcctc 1524715  T
Q  119 aatgatattttcaaggccatcattgagagaaataa 153  Q
    |||| |||| ||||| |||||||||||||| ||||    
T  1524716 aatgctattatcaagaccatcattgagagagataa 1524750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 12121590 - 12121717
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||  |||| ||   |||| || ||||||||  | || || |||||||    
T  12121590 tcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgtcttcaagtgcattgtgatgttcttgcctc 12121689  T
Q  119 aatgatattttcaaggccatcattgaga 146  Q
    | ||||||||||||||||||||||||||    
T  12121690 attgatattttcaaggccatcattgaga 12121717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 553445 - 553290
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||| || |||||||| |||||||||||||| |||||| ||||  |||||||  ||||   |||||||  |||||||||||| ||| ||||||||||    
T  553445 tcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcatgcaaatgttgttgcctc 553346  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggttttgatt 174  Q
    |||| ||  |||| || ||||||||||| | |||  ||||||||||||||||||||    
T  553345 aatggtacattcacggacatcattgagaaagataggagctccacctggttttgatt 553290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1489494 - 1489614
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||| ||    |||  | ||||||||| | || || |||||||    
T  1489494 tcacagagaagggagtgaagcatgtgctagaaaaatgcgcacaactaagagagatcaatttgaaaatgtgtggtcaagtgcatgatgatgttcttgcctc 1489593  T
Q  119 aatgatattttcaaggccatc 139  Q
    | |||||||||||||||||||    
T  1489594 attgatattttcaaggccatc 1489614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1513537 - 1513657
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||| ||||||||||| |||| |||||||||||||| ||||  ||||||| ||||| ||   ||||| ||||||| ||| | || || |||||||    
T  1513537 tcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgttctaaagtgaatggtgatgttcttgcctc 1513636  T
Q  119 aatgatattttcaaggccatc 139  Q
    | |||||||||||||||||||    
T  1513637 attgatattttcaaggccatc 1513657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 1552903 - 1553045
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    |||| |||||||||||||||||||| | |||||| |||    ||||| ||||||| ||||| || |||||| |||||||| ||  | || ||||||| ||    
T  1552903 tcaccgagaagggagtgaagcatgtcggagaaaattgcttgcaactaagagagatcaatttgaaaggttgtcttaaagtggatcatgatgttgttgcttc 1553002  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctcca 161  Q
    | || ||||||||||||||||||||||| | ||||| ||||||    
T  1553003 attggtattttcaaggccatcattgagaaagataactgctcca 1553045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 1508136 - 1508272
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    |||| |||| |||||||||||||| | |||||||||||||| ||||| ||||||| ||||| ||   | ||  ||| || | || | || || |||||||    
T  1508136 tcaccgagatgggagtgaagcatgcgctagaaaaatgcacacaactaagagagatcaatttgaaatatggtcctaaggtacgtggtgatgttcttgcctc 1508235  T
Q  119 aatgatattttcaaggccatcattgagagaaataaca 155  Q
    | ||||||||||||||||||| |||||| ||||||||    
T  1508236 attgatattttcaaggccatcgttgagaaaaataaca 1508272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 1537900 - 1538020
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||| |||||||||||||| ||||| |||||||||||||  ||||| ||||||| ||||| ||  | ||| || ||||| ||| | || || || ||||    
T  1537900 tcacacagaagggagtgaagtatgtgctagaaaaatgcactcaactaagagagatcaatttgaaaaggtgtgttcaagtggatgatgatgttcttacctc 1537999  T
Q  119 aatgatattttcaaggccatc 139  Q
    | |||||||||||||||||||    
T  1538000 attgatattttcaaggccatc 1538020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 1545739 - 1545612
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||| |||||||||||||  ||| |||| |||| |||||| ||||| ||| ||| ||||| | |||||||  |||||||||||||||| || |||| |     
T  1545739 tcacatagaagggagtgaaagatgcggtaaaaaactgcacacaactaagagtgatcaatttgaggggttgtgataaagtgcatgctaatgttattgcttt 1545640  T
Q  119 aatgatattttcaaggccatcattgaga 146  Q
    | |  |||| ||||||||||||||||||    
T  1545639 attagtattatcaaggccatcattgaga 1545612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 6006293 - 6006142
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||| |||||||||||| ||| || |||||||| |||| | || |  ||||||| |||||  ||| ||||  |||||||   ||| || |||||| ||     
T  6006293 tcacaaagaagggagtgatgcaagtcgtagaaaactgcaaacaattgagagagataaatttgcaggattgtcataaagtggtagctgatgttgttgactt 6006194  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggtttt 170  Q
     ||| ||||| ||||||||||||||||| | ||||| |||||||||||||||    
T  6006193 gatggtatttacaaggccatcattgagaaagataactgctccacctggtttt 6006142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 1548557 - 1548699
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||||||||||||| ||| | | |||||| ||| |  ||||  |||| ||||||||  | ||||||||| || |||||| | || |||| || ||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgttttcaattgcatgatgatgttgtcgcttc 1548656  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctcca 161  Q
    | || |||||||||| |||||||||||| | |||||| |||||    
T  1548657 attggtattttcaagaccatcattgagaaagataacaactcca 1548699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 570303 - 570172
Alignment:
Q  33 gtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatattttcaa 132  Q
    ||||| |||||||||||||| |||||| ||||  | ||||| ||||| |||   || | ||||||||||   ||| |||||| ||| |||||||| ||||    
T  570303 gtgaatcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaa 570204  T
Q  133 ggccatcattgagagaaataacagctccacct 164  Q
    | |||||||||||| | ||||| | |||||||    
T  570203 gaccatcattgagaaagataactgttccacct 570172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 1754485 - 1754445
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcaca 59  Q
    |||||||||| ||||||||||| || |||||||||||||||    
T  1754485 tcacagagaaaggagtgaagcaagtagtagaaaaatgcaca 1754445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 27922477 - 27922333
Alignment:
Q  16 atttcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgc 115  Q
    |||||||| ||||||||||||| |||||||||||||| |||||  ||||  || |||||| |||  | ||||||  |||||| ||||||||| ||||| |    
T  27922477 atttcacaaagaagggagtgaaccatgtggtagaaaactgcactcaactgagaaagattagtttggatggttgtcataaagtacatgctaatattgtttc 27922378  T
Q  116 ctcaatgatattttcaaggccatcattgagagaaataacagctcc 160  Q
     || ||| ||| |||||||||||| |||||| | |||||||||||    
T  27922377 ttcgatggtatcttcaaggccatcgttgagacagataacagctcc 27922333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 32151267 - 32151112
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||||||||| ||||||||||||    |||| || | | ||||  | ||||| ||||||| |||||||  | ||||||||||| || ||||||        
T  32151267 tcacagagaagggggtgaagcatgtgaggaaaaactgtatacaactgagggagatcaatttaaggggttgtgatcaagtgcatgctgatattgttgataa 32151168  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggttttgatt 174  Q
    |||| ||||||||||||||||||||||| | ||||| ||||||||| ||| |||||    
T  32151167 aatggtattttcaaggccatcattgagaaagataactgctccacctcgttatgatt 32151112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 5767788 - 5767915
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||| |||||||| | ||| |||||| | || |||||| ||||  ||||||| |||||  | || |||  ||| ||||| |||||  ||||||||||    
T  5767788 tcacagacaagggagtcatgcacgtggtaaacaactgcacacaactcagagagataaatttggatggctgtcctaatgtgcaagctaaagttgttgcctc 5767887  T
Q  119 aatgatattttcaaggccatcattgaga 146  Q
     ||| || ||||||||||||||||||||    
T  5767888 catggtagtttcaaggccatcattgaga 5767915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 17628147 - 17628296
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||||| |||||||||||||||||| |  |||| |||||| | ||  | ||||| | ||||| |||||||| | ||||| | |||||| |||||| |      
T  17628147 tcacagacaagggagtgaagcatgtgttgaaaaactgcacacagctgagggagatcagtttaaggggttgttatgaagtgaaagctaatattgttgacat 17628246  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctccacctggtt 168  Q
     ||| ||||| |||||||| |||||||| | ||||  || ||||||||||    
T  17628247 gatggtatttgcaaggccaacattgagaaagataattgccccacctggtt 17628296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 45245200 - 45245343
Alignment:
Q  1 tgaaaaattgttaccatttcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgca 100  Q
    ||||||| ||||| ||| ||||||| ||||||||||| |||||||||||||| |||||| ||||   |||||| ||||| | |   || ||| |||||||    
T  45245200 tgaaaaaatgttatcatgtcacagataagggagtgaaacatgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgca 45245299  T
Q  101 tgctaattttgttgcctcaatgatattttcaaggccatcattga 144  Q
    ||||||| || ||| ||| ||| |||||||||||||||| ||||    
T  45245300 tgctaatgttattgtctcgatggtattttcaaggccatcgttga 45245343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 28935004 - 28934888
Alignment:
Q  30 ggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatatttt 129  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||  ||||  | | |||| ||||||||||| ||||||| || |||||| |  ||||      
T  28935004 ggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttggatgattgtgttaaagtgcatcctaatttggtagcctcactagtattac 28934905  T
Q  130 caaggccatcattgaga 146  Q
    ||||| |||||||||||    
T  28934904 caaggtcatcattgaga 28934888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 9411245 - 9411166
Alignment:
Q  95 agtgcatgctaattttgttgcctcaatgatattttcaaggccatcattgagagaaataacagctccacctggttttgatt 174  Q
    ||||||||||||| |||||| |   ||| ||||||||||||| ||||||||  | |||| | ||||||||||||||||||    
T  9411245 agtgcatgctaatattgttgacgatatggtattttcaaggccgtcattgagcaagataaaaactccacctggttttgatt 9411166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 6432127 - 6432087
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcaca 59  Q
    ||||| ||||||||||||| | |||||||||||||||||||    
T  6432127 tcacacagaagggagtgaaacttgtggtagaaaaatgcaca 6432087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6603317 - 6603373
Alignment:
Q  1 tgaaaaattgttaccatttcacagagaagggagtgaagcatgtggtagaaaaatgca 57  Q
    ||||| |||||||  || |||||||||| |||||||| |||||||||||||| ||||    
T  6603317 tgaaatattgttattatgtcacagagaaaggagtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 14820659 - 14820599
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaattt 79  Q
    ||||||||||||| ||||| ||||||||| |||| |||||| | ||  |||||||||||||    
T  14820659 tcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaattt 14820599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 9581024 - 9580908
Alignment:
Q  30 ggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctcaatgatatttt 129  Q
    |||||||||| |||||||||||| |||||| |||| | ||||||| |||| | |||||||| ||||||||||  || | | ||| | |||||| ||| ||    
T  9581024 ggagtgaagcgtgtggtagaaaattgcacacaactggaagagattgatttgaggggttgttataaagtgcatcgtagtgtggtttcgtcaatggtatctt 9580925  T
Q  130 caaggccatcattgaga 146  Q
    |||||||||| ||||||    
T  9580924 caaggccatcgttgaga 9580908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 7554454 - 7554415
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcac 58  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  7554454 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 7554415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 43634066 - 43634012
Alignment:
Q  116 ctcaatgatattttcaaggccatcattgagagaaataacagctccacctggtttt 170  Q
    ||||||| ||||||||||||||||||||||| | |||| ||| |||||| |||||    
T  43634066 ctcaatggtattttcaaggccatcattgagaaagataatagcgccacctcgtttt 43634012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 41901668 - 41901795
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||| |||||||||||||||||||||||||||| || ||  || |  || |||||| ||| || |||||||||||||| ||||||||| ||||| | |     
T  41901668 tcacaaagaagggagtgaagcatgtggtagaaaactgtacgcaattgagaaagattagtttgaatggttgttttaaagtacatgctaatgttgtttcttt 41901767  T
Q  119 aatgatattttcaaggccatcattgaga 146  Q
     ||| |||||||||| || || ||||||    
T  41901768 gatggtattttcaagaccgtcgttgaga 41901795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 32267441 - 32267300
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaatttaaagggttgttttaaagtgcatgctaattttgttgcctc 118  Q
    ||||| ||||||||||||||||||| |||||||| |||||  ||||  || ||||||||||  | ||||||   || || |||||| |||||||| | ||    
T  32267441 tcacaaagaagggagtgaagcatgtagtagaaaactgcacgcaacttagaaagattaatttctatggttgtcagaaggtccatgctgattttgtttcttc 32267342  T
Q  119 aatgatattttcaaggccatcattgagagaaataacagctcc 160  Q
     ||| ||| ||||||||| || |||||| | ||||| |||||    
T  32267341 gatggtatcttcaaggccgtcgttgagaaagataacggctcc 32267300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 12845557 - 12845517
Alignment:
Q  21 acagagaagggagtgaagcatgtggtagaaaaatgcacaaa 61  Q
    |||||||||||||||| ||| ||||||| ||||||||||||    
T  12845557 acagagaagggagtgaggcaagtggtagcaaaatgcacaaa 12845517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 38267689 - 38267749
Alignment:
Q  19 tcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaggagagattaattt 79  Q
    |||| ||||||||||||| |||||||||  |||| |||||||||||  ||||||| |||||    
T  38267689 tcaccgagaagggagtgatgcatgtggtcaaaaactgcacaaaactcagagagatcaattt 38267749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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