View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_16 (Length: 427)
Name: NF12881_low_16
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 2291165 - 2291285
Alignment:
| Q |
298 |
cctttgaattcgtctttcttgtagactgctattcttttgtttgatgttttcctttaaacttgtttgcttacgcagtgcttctgttatatatgaattcata |
397 |
Q |
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| T |
2291165 |
cctttgaattcgtctttcttgtagactgctattcttttgtttgatgttttcctttaaacttgtttgcttacgtaatgcttttgttatatatgaattcata |
2291264 |
T |
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| Q |
398 |
attttttatttatattcttct |
418 |
Q |
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| T |
2291265 |
attttttatttatattcttct |
2291285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 2290921 - 2290994
Alignment:
| Q |
79 |
cttccttcttaactcttcatgtgtttttccttcttccctactgttttataaatacgaaatcaagaacacatatt |
152 |
Q |
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| T |
2290921 |
cttccttcttaactcttcatgtgtttttccttcttccctactgttttataaatacgaattcaataacacatatt |
2290994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 2290816 - 2290872
Alignment:
| Q |
18 |
cacatacaacatttgcttctttctgataggggtgctttctcttcgtattccatagtg |
74 |
Q |
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| T |
2290816 |
cacatacaacatttgcttctttctgataggggtgctttctcttcgtattccatagtg |
2290872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 2291020 - 2291075
Alignment:
| Q |
149 |
tattgtggattttatattgttacatctacatccaaggtcttggatagattgaaagg |
204 |
Q |
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| T |
2291020 |
tattttggattttatattgttacatctacatccaaggtcttggatagattgaaagg |
2291075 |
T |
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