View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_18 (Length: 409)

Name: NF12881_low_18
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_18
NF12881_low_18
[»] chr6 (8 HSPs)
chr6 (176-395)||(16572745-16572964)
chr6 (176-395)||(16874627-16874845)
chr6 (181-395)||(16580766-16580980)
chr6 (181-395)||(16614400-16614614)
chr6 (1-159)||(16875234-16875390)
chr6 (94-159)||(16581385-16581450)
chr6 (94-159)||(16613930-16613995)
chr6 (89-158)||(16976916-16976983)
[»] chr2 (2 HSPs)
chr2 (237-385)||(233279-233427)
chr2 (176-395)||(21629513-21629732)
[»] chr1 (1 HSPs)
chr1 (237-385)||(7392068-7392216)
[»] chr7 (1 HSPs)
chr7 (247-385)||(48298405-48298543)
[»] scaffold0256 (1 HSPs)
scaffold0256 (272-370)||(10841-10939)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 16572964 - 16572745
Alignment:
Q  176 aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||    
T  16572964 aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaatcatacttctgtagctctttcattactcttagca 16572865  T
Q  276 aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttg 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16572864 aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttg 16572765  T
Q  376 catgatgctcgttattcatc 395  Q
    ||| |||||||| |||||||    
T  16572764 cattatgctcgtcattcatc 16572745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 16874845 - 16874627
Alignment:
Q  176 aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgca 275  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||    
T  16874845 aataggaca-gtcttcacgcctgccacctgtaggagcggcagtgcaatccaaccgacacttcctaaccatgcttctgtagctctttcattactcttagca 16874747  T
Q  276 aggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttg 375  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16874746 aggatggataatttctcagtcaattcgaacgccaaagcctgcaccatagagagttcaacatttcggaacacaatgcacccagatggctgatcccaccttg 16874647  T
Q  376 catgatgctcgttattcatc 395  Q
    |||||||||| | |||||||    
T  16874646 catgatgctcatcattcatc 16874627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 181 - 395
Target Start/End: Complemental strand, 16580980 - 16580766
Alignment:
Q  181 gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat 280  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  16580980 gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat 16580881  T
Q  281 ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga 380  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16580880 ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga 16580781  T
Q  381 tgctcgttattcatc 395  Q
    ||||||| |||||||    
T  16580780 tgctcgtaattcatc 16580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 181 - 395
Target Start/End: Original strand, 16614400 - 16614614
Alignment:
Q  181 gacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactgacacttcctaaccatccttctgtagctctttcattactctttgcaaggat 280  Q
    ||||||||||||||||| ||| ||||||||| |||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| ||||||||    
T  16614400 gacatgtcttcacgcctaccatctgaaggagtggcagtgcaatccacccgacacttcctaaccatgcttctgtagctctttcactactcttagcaaggat 16614499  T
Q  281 ggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga 380  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16614500 ggataatttctcggtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccaccttgcatga 16614599  T
Q  381 tgctcgttattcatc 395  Q
    ||||||| |||||||    
T  16614600 tgctcgtaattcatc 16614614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 16875390 - 16875234
Alignment:
Q  1 tcaacttagtagaaagacagaatgagagctctactattgttgatcaacatctta-gcggtgaacttgtgtgacactgtataattataagtaacttgttta 99  Q
    ||||||||||||||| |||||||||||||||| ||||| ||||||||  ||||| | ||| ||||||||||||||||||||||   ||| ||||||||||    
T  16875390 tcaacttagtagaaatacagaatgagagctctcctattattgatcaatctcttaagtggtaaacttgtgtgacactgtataat---aagcaacttgttta 16875294  T
Q  100 tcgttagagtttaatttaaacgtagagattaatgttgaactgttatataatgttgaacta 159  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16875293 tcgttggagtttaatttaaacgtagagattaatgttgaactgttatataatgttgaacta 16875234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 16581450 - 16581385
Alignment:
Q  94 tgtttatcgttagagtttaatttaaacgtagagattaatgttgaactgttatataatgttgaacta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16581450 tgtttatcgttagagtttaatttaaacgtagagattaatgttgaactgttatttaatgttgaacta 16581385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 16613930 - 16613995
Alignment:
Q  94 tgtttatcgttagagtttaatttaaacgtagagattaatgttgaactgttatataatgttgaacta 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  16613930 tgtttatcgttagagtttaatttaaacgtagagattaatgttgaactgttatttaatgttgaacta 16613995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 158
Target Start/End: Original strand, 16976916 - 16976983
Alignment:
Q  89 taacttgtttatcgttagagtttaatttaaacgtagagattaatgttgaactgttatataatgttgaact 158  Q
    |||||||||||| | | |||||||||| |||||||||  | ||||||||||| |||||||||| ||||||    
T  16976916 taacttgtttattgcttgagtttaattgaaacgtaga--tcaatgttgaactcttatataatggtgaact 16976983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 237 - 385
Target Start/End: Original strand, 233279 - 233427
Alignment:
Q  237 cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat 336  Q
    ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||    
T  233279 cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat 233378  T
Q  337 ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc 385  Q
    ||| ||| | ||||||||||| |||||||||||| ||||||||| ||||    
T  233379 ttctgaaaataatgcacccagttggctgatcccagcttgcatgaagctc 233427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 176 - 395
Target Start/End: Complemental strand, 21629732 - 21629513
Alignment:
Q  176 aataggacatgtcttcacgcctgccacctgaaggagcggcagtgcaatccaactga-cacttcctaaccatccttctgtagctctttcattactctttgc 274  Q
    ||||||||||||||| | || |||||||||||| ||||| | || |||||||| || ||   ||| ||| | ||| ||||||||||||||||||||||||    
T  21629732 aataggacatgtcttgatgcatgccacctgaagcagcggtattgtaatccaaccgatcatcgcctgaccttgcttatgtagctctttcattactctttgc 21629633  T
Q  275 aaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatcccacctt 374  Q
    |||||| |||| ||| | |||||||||||||||||| ||||||||| | ||| |||||||||||||||| ||||||||||||||||| |||||||| |      
T  21629632 aaggatagata-tttattagtcaactcgaacgccaaggcctgcacccttgagtgttcaacatttcggaatacaatgcacccagatggttgatcccagcca 21629534  T
Q  375 gcatgatgctcgttattcatc 395  Q
    |||||| |||||  |||||||    
T  21629533 gcatgaagctcgccattcatc 21629513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 237 - 385
Target Start/End: Complemental strand, 7392216 - 7392068
Alignment:
Q  237 cctaaccatccttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacat 336  Q
    ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||    
T  7392216 cctaaccttgcttctgtagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagtgttcaacat 7392117  T
Q  337 ttcggaacacaatgcacccagatggctgatcccaccttgcatgatgctc 385  Q
    ||||||| | ||||||||||| ||| |||||||| ||||||||| ||||    
T  7392116 ttcggaaaataatgcacccagttggttgatcccagcttgcatgaagctc 7392068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 247 - 385
Target Start/End: Original strand, 48298405 - 48298543
Alignment:
Q  247 cttctgtagctctttcattactctttgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacac 346  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||| | ||| |||||||||||| ||| |     
T  48298405 cttctgaagctctttcattactctctgcaaggatagataatttctcagtcaactggaatgccaaagcctgcacccttgagagttcaacatttctgaaaat 48298504  T
Q  347 aatgcacccagatggctgatcccaccttgcatgatgctc 385  Q
    ||||||||||| |||||||||||| ||||||||| ||||    
T  48298505 aatgcacccagttggctgatcccagcttgcatgaagctc 48298543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 272 - 370
Target Start/End: Original strand, 10841 - 10939
Alignment:
Q  272 tgcaaggatggataatttctcagtcaactcgaacgccaaagcctgcaccatagagggttcaacatttcggaacacaatgcacccagatggctgatccca 370  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||||| ||||||||||||| |||||||| || |||||    
T  10841 tgcaaggatagataatttctcagtcaacttgaacgacaaagcctgcacccttgagtgttcaacattttggaacacaatgcatccagatggttggtccca 10939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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