View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_21 (Length: 346)
Name: NF12881_low_21
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 41 - 155
Target Start/End: Complemental strand, 22080818 - 22080708
Alignment:
| Q |
41 |
tttttccattttattttcgatttcacagctcaagcatttattaattcaatctcattttgttccgnnnnnnnncttcccatttttcagtttccttcaagca |
140 |
Q |
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| T |
22080818 |
tttttccattttattttcgatttcacagctcaagcatttattaattgaatctcattttgttccgttttt----ttcccatttttcaggttccttcaagca |
22080723 |
T |
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| Q |
141 |
ttcttcatcctggta |
155 |
Q |
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||||||||||||||| |
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| T |
22080722 |
ttcttcatcctggta |
22080708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 330
Target Start/End: Complemental strand, 22080583 - 22080503
Alignment:
| Q |
250 |
gtgaacaacatttcaatagatcggttttccttcttgcattaaatcaatttttcgaactaaaattgtttcagaagtcatttt |
330 |
Q |
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|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
22080583 |
gtgaacaacacttaaatagatcggttttccttcttgcattaaatcagtttttcgaactaaaattgtttgagaagtcatttt |
22080503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 1521980 - 1522017
Alignment:
| Q |
118 |
catttttcagtttccttcaagcattcttcatcctggta |
155 |
Q |
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| T |
1521980 |
cattttgcaggttccttcaagcattcttcatcctggta |
1522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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