View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_24 (Length: 326)
Name: NF12881_low_24
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 40513867 - 40513559
Alignment:
| Q |
1 |
cataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagtt |
100 |
Q |
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| T |
40513867 |
cataggtttgaagatgatcctgaaatatcaaaaattcccacaacaagtggagttaaggtgaaataccacattgatggaacacaaatacctgaacaaagtt |
40513768 |
T |
|
| Q |
101 |
cgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttnnnnnnngagt |
200 |
Q |
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| T |
40513767 |
cgaaaaagtctcgaaagaatgaaacaaggaacaagtttttgaaaacaagagtattgtcaagagtattctcagaagactatgaaagagttaaaaaaagagt |
40513668 |
T |
|
| Q |
201 |
attagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513667 |
attagtattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttat |
40513568 |
T |
|
| Q |
301 |
ttgccagtg |
309 |
Q |
| |
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||||||||| |
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| T |
40513567 |
ttgccagtg |
40513559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 21611600 - 21611700
Alignment:
| Q |
206 |
tattagatcctaggggacaactcatacatcgttggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgcc |
305 |
Q |
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| T |
21611600 |
tatttgatcctaggggacaaaccattcaccaatggaacaagattttcttggtagcatgtttaatttctttgtttgtggatcctctcttcttttatttgcc |
21611699 |
T |
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| Q |
306 |
a |
306 |
Q |
| |
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| |
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| T |
21611700 |
a |
21611700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 308
Target Start/End: Original strand, 28261535 - 28261605
Alignment:
| Q |
238 |
tggaacaagatatttttagtagcatgtttagtttctttgtttgtggatccactgttcttttatttgccagt |
308 |
Q |
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|||||||| ||||| |||| ||| ||||| |||| ||||||||||||||||| |||||||| || ||||| |
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| T |
28261535 |
tggaacaaaatattcttagcagcttgtttgatttcattgtttgtggatccacttttcttttacttaccagt |
28261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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