View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_25 (Length: 326)
Name: NF12881_low_25
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 294
Target Start/End: Original strand, 25737506 - 25737781
Alignment:
| Q |
15 |
caaaggataattgggttgcaccttttgaactcgtatcattagacaaagtatcctcaaaataaa--ctgataattctccatcctctgttttacaagaagag |
112 |
Q |
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| T |
25737506 |
caaaggataattgggttgcaccttttgaactcgtatcattacacaaagtatcctcaaaataaaaactgataagtctccatcctctgttttacaagaagag |
25737605 |
T |
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| Q |
113 |
ctgacattaaaatatgagaagtttctgaaaccaatatcactatctctttttcttttgtaaagactctttcaagcttctcaatagattttcctattaccat |
212 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25737606 |
ctgacattaaaatatgagaagtttttgaaaccaatattactatctctt------ttgtaaagactctttcaagcttctcaatagattttcctattaccat |
25737699 |
T |
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| Q |
213 |
ccttattgcccatcataaatcattaatttcgttatcaatttatcaaaaaatcctttttaaattagaaaacatctcatgagat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25737700 |
ccttattgcccatcataaatcattaatttcgttatcaatttatcaaaaaatcctttccaaattagaaaacatctcatgagat |
25737781 |
T |
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