View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_26 (Length: 321)
Name: NF12881_low_26
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 22362147 - 22362436
Alignment:
| Q |
19 |
atcattgatccctaacatacacaacgcatgaaaaagaaaagatgaataagaacccagca---agatcatggttaaaatatgtaaggtcttgtttgtttgc |
115 |
Q |
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|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
22362147 |
atcattgatccctaacatacacaatgcatgaaatagaaaagatgaataagaacccagcagcaatatcatggttaaaatatgtaaggtcttgtttgtttgc |
22362246 |
T |
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| Q |
116 |
ataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttgagcggagaataatcgccaccatccaatgcactgctccaaccatatgcatttcg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362247 |
ataccgcggtgagattgacgtgaaaaacaccgatatcaggtattttgagcggagaataatcgccaccatccaatgcactgctccaaccatatgcatttcg |
22362346 |
T |
|
| Q |
216 |
gaaatcaggttttctatcataaagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttttcctaatac |
305 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22362347 |
gaaatcaggttttctatcatagagattgtaagagtcaggggaatcagctctgtctttattctctatcttcttcttctcttttcctaatac |
22362436 |
T |
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