View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_27 (Length: 311)

Name: NF12881_low_27
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_27
NF12881_low_27
[»] chr2 (8 HSPs)
chr2 (20-195)||(14949574-14949745)
chr2 (220-297)||(12701951-12702029)
chr2 (220-292)||(12702196-12702269)
chr2 (220-294)||(12261092-12261167)
chr2 (220-296)||(2217873-2217950)
chr2 (194-292)||(21304326-21304425)
chr2 (234-296)||(25945864-25945927)
chr2 (233-296)||(36065480-36065544)
[»] chr4 (14 HSPs)
chr4 (194-296)||(55620191-55620294)
chr4 (194-296)||(55627495-55627598)
chr4 (220-296)||(1113234-1113311)
chr4 (196-296)||(24039250-24039351)
chr4 (220-294)||(17254714-17254789)
chr4 (234-296)||(51399254-51399317)
chr4 (220-296)||(1113443-1113520)
chr4 (220-296)||(8607800-8607877)
chr4 (220-296)||(24039515-24039592)
chr4 (220-296)||(29430171-29430248)
chr4 (220-296)||(36215673-36215750)
chr4 (227-296)||(43099355-43099424)
chr4 (234-296)||(49905766-49905829)
chr4 (220-296)||(48018634-48018711)
[»] chr1 (23 HSPs)
chr1 (221-296)||(52285079-52285154)
chr1 (220-296)||(7714196-7714273)
chr1 (220-296)||(47422127-47422204)
chr1 (195-296)||(52285318-52285420)
chr1 (220-296)||(39277848-39277925)
chr1 (187-296)||(19920496-19920606)
chr1 (196-296)||(45823053-45823154)
chr1 (197-293)||(16959107-16959204)
chr1 (220-296)||(28990323-28990400)
chr1 (220-296)||(39277606-39277683)
chr1 (220-292)||(47421915-47421988)
chr1 (220-295)||(27334369-27334445)
chr1 (197-296)||(30050181-30050281)
chr1 (220-295)||(36077121-36077197)
chr1 (199-296)||(30049918-30050016)
chr1 (220-296)||(10394154-10394231)
chr1 (220-296)||(10394396-10394473)
chr1 (220-292)||(16958866-16958939)
chr1 (220-296)||(28990564-28990641)
chr1 (220-296)||(45822811-45822888)
chr1 (220-295)||(49186024-49186100)
chr1 (220-296)||(36076909-36076986)
chr1 (222-296)||(15158349-15158424)
[»] chr3 (13 HSPs)
chr3 (220-296)||(49220348-49220425)
chr3 (194-296)||(31071180-31071283)
chr3 (220-292)||(49220138-49220211)
chr3 (194-297)||(11047243-11047347)
chr3 (194-291)||(31070947-31071045)
chr3 (220-296)||(28253706-28253783)
chr3 (199-296)||(18733945-18734042)
chr3 (220-296)||(52857000-52857077)
chr3 (193-277)||(18734154-18734238)
chr3 (241-296)||(46453140-46453196)
chr3 (234-294)||(4953392-4953453)
chr3 (220-296)||(11046992-11047068)
chr3 (220-296)||(26988829-26988906)
[»] chr8 (12 HSPs)
chr8 (194-296)||(36194893-36194996)
chr8 (193-296)||(36194624-36194728)
chr8 (195-296)||(31933272-31933374)
chr8 (200-296)||(12654967-12655064)
chr8 (193-296)||(31933537-31933641)
chr8 (220-296)||(13557405-13557482)
chr8 (198-296)||(12654703-12654802)
chr8 (234-296)||(21015198-21015261)
chr8 (220-296)||(18847391-18847467)
chr8 (234-296)||(10134646-10134709)
chr8 (220-277)||(13557164-13557221)
chr8 (220-291)||(18847605-18847677)
[»] chr7 (16 HSPs)
chr7 (220-297)||(8462871-8462949)
chr7 (220-296)||(32871633-32871711)
chr7 (220-296)||(6000503-6000580)
chr7 (220-294)||(4133105-4133180)
chr7 (220-292)||(43392322-43392395)
chr7 (234-296)||(16962882-16962945)
chr7 (227-296)||(6000713-6000783)
chr7 (194-295)||(25731916-25732018)
chr7 (220-296)||(18417482-18417559)
chr7 (224-296)||(32389708-32389781)
chr7 (241-296)||(24846289-24846345)
chr7 (233-296)||(30284182-30284246)
chr7 (234-296)||(30283956-30284018)
chr7 (234-294)||(24485803-24485864)
chr7 (220-296)||(37691719-37691796)
chr7 (233-296)||(472635-472699)
[»] chr5 (7 HSPs)
chr5 (234-296)||(18508788-18508851)
chr5 (220-296)||(9989980-9990056)
chr5 (198-296)||(8417561-8417660)
chr5 (224-296)||(9990189-9990262)
chr5 (194-297)||(18968767-18968871)
chr5 (234-296)||(35463829-35463892)
chr5 (220-296)||(18968533-18968610)
[»] chr6 (1 HSPs)
chr6 (220-297)||(1211660-1211738)
[»] scaffold0220 (1 HSPs)
scaffold0220 (234-296)||(26001-26064)


Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 14949745 - 14949574
Alignment:
Q  20 taccatgcctacccaacagtatgaagg-catataaagaaggatgggaatccaactaagcacgataagcctcccgatcctaatttaatgggg-aagatcac 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  14949745 taccatgcctacccaacagtatgaaggacatataaagaaggatgggaatccaactaagcacaataagcctcccgatcctaatttaatggggaaagatcac 14949646  T
Q  118 atgcaaattgaagaaatcaacaaaaatgtggatagagagaggtcgtgaagagcatgccaaggactgaagaaaaagata 195  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    | ||||||||||||||||    
T  14949645 atgcaaattgaagaaatcaacaaaaatgtggat--agagaggtcgtgaagagcatg----gcactgaagaaaaagata 14949574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 12701951 - 12702029
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtatt 297  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| ||||||||| ||||||||||||    
T  12701951 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtatt 12702029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 12702269 - 12702196
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    ||||||||| | |||||||||||||||| ||||| |||||| | ||| |||||||| |||||||||||||||||    
T  12702269 taacttgatatcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaa 12702196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 12261167 - 12261092
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 294  Q
    ||||||||||| |||||||||||||||| |||||  ||||| | ||| |||||| | |||||||||||||||||||    
T  12261167 taacttgatttcaagtatcggtttggtcacataagcaataaaaggtccgtttagctcccttaactttatttaaagt 12261092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 2217950 - 2217873
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||  ||||||||| ||||| |||||| | ||| ||||| || |||||||||||||||||||||    
T  2217950 taacttgatttcaagtaatggtttggtcccataagtaataaaatgtccgtttatgtcccttaactttatttaaagtat 2217873  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 21304326 - 21304425
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtc-cttaactttatttaaa 292  Q
    |||||||||||| ||  |||||  | ||||||||||| || ||||||||||||| ||||| |||||| | ||  |||||| || ||||||||||||||||    
T  21304326 taggcttaaatgctcaattgatcccttaacttgatttcaaatatcggtttggtcccataagtaataaaatgttcgtttagatcgcttaactttatttaaa 21304425  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 25945864 - 25945927
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  25945864 gtatcgctttggtcccataagtaataaaagatctgtttaggtcccttaactttatttaaagtat 25945927  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 36065544 - 36065480
Alignment:
Q  233 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||| ||||||||||||| |||||| | ||| |||| ||| ||||||||||||| |||||||    
T  36065544 agtatcgttttggtctcataagtaataaaaggtccgttttggtcccttaactttattgaaagtat 36065480  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 55620191 - 55620294
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||| |||    
T  55620191 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaa 55620290  T
Q  293 gtat 296  Q
    ||||    
T  55620291 gtat 55620294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 296
Target Start/End: Original strand, 55627495 - 55627598
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||||||||||| ||||||||||||| |||    
T  55627495 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtctgtttaggtcccttaactttattaaaa 55627594  T
Q  293 gtat 296  Q
    ||||    
T  55627595 gtat 55627598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 1113234 - 1113311
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| ||||||||| |||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  1113234 taacttgatttcaagtatcgggttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtat 1113311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 24039250 - 24039351
Alignment:
Q  196 ggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagt 294  Q
    |||||||||||||  |||||  | ||||||||||| |||||||||||||||| ||||| |||||| ||||  |||||||||| |||| ||||||||||||    
T  24039250 ggcttaaatgttcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagttcgtttaggtcctttaattttatttaaagt 24039349  T
Q  295 at 296  Q
    ||    
T  24039350 at 24039351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 17254789 - 17254714
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 294  Q
    ||||||||||| |||||| |||||| |||||||| |||||| | ||| |||||||| |||||||||||||||||||    
T  17254789 taacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagt 17254714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 51399254 - 51399317
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| |||||||||||||| |||||||||||||||||||||    
T  51399254 gtatcgctttggtcccataagtaataaaaagtctgtttaggtcccttaactttatttaaagtat 51399317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 1113520 - 1113443
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||| | ||||||| |||||||| ||| | |||||||||||| ||||||||| |||||||||||    
T  1113520 taacttgatttcaagtattgatttggtcccataaatattaaaaggtctgtttaggtcccttaacttcatttaaagtat 1113443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 8607800 - 8607877
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| ||||||||||||| || ||||| |||||| | ||| ||||| || |||||||||||||||||||||    
T  8607800 taacttgatttcaagtatcggtttgatcccataagtaataaaaggtccgtttaagtcccttaactttatttaaagtat 8607877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 24039592 - 24039515
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||| ||||||||||||||| |||||| | ||  |||||||| |||||||||||||| ||||||    
T  24039592 taacttgatttcaagtattggtttggtctcataagtaataaaaggttcgtttaggtcccttaactttattttaagtat 24039515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 29430248 - 29430171
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||||||||||||||| ||||||||| ||||| |||||| | || ||||||| | |||||| ||||||||||||||    
T  29430248 taacttgattttaagtattggtttggtcccataagtaataaaaggtatgtttagatcccttaattttatttaaagtat 29430171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 36215673 - 36215750
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttag-gtccttaactttatttaaagtat 296  Q
    |||||| |||| |||||||||||||||| ||||| |||||| | ||| ||||||  ||||||||||||||||||||||    
T  36215673 taacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagattccttaactttatttaaagtat 36215750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 43099355 - 43099424
Alignment:
Q  227 attttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 296  Q
    ||||||| |||||||||| |  ||||| |||||| | ||| |||||||||||||||||||||||||||||    
T  43099355 attttaaatatcggtttgattccataagtaataaaaggtccgtttaggtccttaactttatttaaagtat 43099424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 49905766 - 49905829
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| ||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||||    
T  49905766 gtatcgctttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 49905829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 48018634 - 48018711
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| || ||||||||||||| || || |||||| |  ||||||||| | |||||| ||||||||||||||    
T  48018634 taacttgatttaaaatatcggtttggtcccaaaagtaataaaatatctgtttagatcccttaattttatttaaagtat 48018711  T

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Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 221 - 296
Target Start/End: Original strand, 52285079 - 52285154
Alignment:
Q  221 aacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 296  Q
    ||||| ||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||    
T  52285079 aacttaattttaagtattggtttggtctcataagtaataaaaagtccgtttaggtccttaactttatttaaagtat 52285154  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 7714196 - 7714273
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||||||||||||||||||||||||| ||||| |||||| |||||||| ||||| |||||||||||||||||||||    
T  7714196 taacttgattttaagtatcggtttggtcccataagtaataaaaagtctgtctaggtcccttaactttatttaaagtat 7714273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 47422204 - 47422127
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  47422204 taacttgatttcaagtatcggtttggtcccataagtaataagaggtctgtttaggtcccttaactttatttaaagtat 47422127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 52285420 - 52285318
Alignment:
Q  195 aggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 293  Q
    ||||||||||||||||||| |  | |||||||||||||||||||  |||||||  |||| |||||| | |||||||||||| ||||||||||||||||||    
T  52285420 aggcttaaatgttcttttggtcccttaacttgattttaagtatcaatttggtcctataagtaataaaaggtctgtttaggtcccttaactttatttaaag 52285321  T
Q  294 tat 296  Q
    |||    
T  52285320 tat 52285318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 39277925 - 39277848
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  39277925 taacttgatttcaagtatcggtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 39277848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 296
Target Start/End: Original strand, 19920496 - 19920606
Alignment:
Q  187 aaaaagataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaacttt 285  Q
    ||||| ||||||||||||| ||  |||||  | ||||||||||| |||||||||||||||| ||||| |||||| |  || |||||||| ||||||||||    
T  19920496 aaaaaaataggcttaaatgctcaattgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaagatccgtttaggtcccttaacttt 19920595  T
Q  286 atttaaagtat 296  Q
    |||||||||||    
T  19920596 atttaaagtat 19920606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 45823154 - 45823053
Alignment:
Q  196 ggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 294  Q
    |||||||||||||  |||||  | ||||||||||| || ||| ||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||    
T  45823154 ggcttaaatgttcaattgatcccttaacttgatttcaaatattggtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagt 45823055  T
Q  295 at 296  Q
    ||    
T  45823054 at 45823053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 16959204 - 16959107
Alignment:
Q  197 gcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 293  Q
    ||||||||| |||||||||    | ||||||||| |||||||||||||||| ||||| |||||| || | ||||||||| ||||||||||||||||||    
T  16959204 gcttaaatgctcttttgatcctttgacttgatttcaagtatcggtttggtcccataagtaataaaaattatgtttaggtcccttaactttatttaaag 16959107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 28990323 - 28990400
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| | |||||| |||||||||||||||||||||    
T  28990323 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgcttaggtcccttaactttatttaaagtat 28990400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 39277606 - 39277683
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| |||| ||||||| |||||||| ||||| |||||| ||||| |||||||||| |||||||||||||||||||    
T  39277606 taacttaatttcaagtatcagtttggtcccataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 39277683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 47421915 - 47421988
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    ||||||||||| || ||||||||||||| ||||| |||||| | |||||||||||| |||||||||||||||||    
T  47421915 taacttgatttcaaatatcggtttggtcccataagtaataaaatgtctgtttaggtcccttaactttatttaaa 47421988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 27334369 - 27334445
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagta 295  Q
    ||||||||||| |||||||| ||||||||||||| |||||| |  || |||||||| ||||||||||||||||||||    
T  27334369 taacttgatttcaagtatcgatttggtctcataagtaataaaagatccgtttaggtcccttaactttatttaaagta 27334445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 30050281 - 30050181
Alignment:
Q  197 gcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtc-cttaactttatttaaagta 295  Q
    ||||||||||||||||| |    ||||||||||| |||||||||||||||| || || |||||| ||||| | ||| ||| |||||||||||||||||||    
T  30050281 gcttaaatgttcttttggtccattaacttgatttcaagtatcggtttggtcgcacaagtaataaaaagtccgattatgtctcttaactttatttaaagta 30050182  T
Q  296 t 296  Q
    |    
T  30050181 t 30050181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 36077197 - 36077121
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttagg-tccttaactttatttaaagta 295  Q
    ||||||||||| ||||||||||||| || ||||| |||||| | ||||||||||| || ||||||||||||||||||    
T  36077197 taacttgatttcaagtatcggtttgctcccataagtaataaaaggtctgtttaggttcattaactttatttaaagta 36077121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 30049918 - 30050016
Alignment:
Q  199 ttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgttt-aggtccttaactttatttaaagtat 296  Q
    ||||||| ||||||| |  | |||||| |||| |||||||||||||||||||||  |||||| ||||| |||| ||  |||||||||||||||||||||    
T  30049918 ttaaatgctcttttggtcccttaactttatttcaagtatcggtttggtctcatatgtaataaaaagtccgtttgagtcccttaactttatttaaagtat 30050016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 10394154 - 10394231
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||  |||||| | |||||||||||||||||||||    
T  10394154 taacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttagatcccttaactttatttaaagtat 10394231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 10394473 - 10394396
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||| | ||||||| |||||||| ||| | ||| |||||||| |||||||||||||||||||||    
T  10394473 taacttgatttcaagtattgttttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaagtat 10394396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 16958866 - 16958939
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    ||||||||||| |||| ||||||||||| |||||||||||| | |||  ||||||| |||||||||||||||||    
T  16958866 taacttgatttcaagtgtcggtttggtcccataaataataaaaggtccatttaggtcccttaactttatttaaa 16958939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 28990641 - 28990564
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||| ||||||||| ||||| |||||| | ||| |||||||| ||||||||| |||||||||||    
T  28990641 taacttgatttcaagtattggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtat 28990564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 45822811 - 45822888
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| |||| |||||||  ||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  45822811 taacttaatttcaagtatcaatttggtcccataagtaataaaaagtccgtttaggttccttaactttatttaaagtat 45822888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 49186024 - 49186100
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagta 295  Q
    ||||||||||| ||||||| ||||||||| |||| |||||| | ||| ||||| |||| ||||||||||||||||||    
T  49186024 taacttgatttcaagtatcagtttggtcttataagtaataaaaggtccgtttacgtcctttaactttatttaaagta 49186100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 36076909 - 36076986
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| ||||||||| ||| || ||||| |||||| | ||  |||||||| |||||||||||||||||||||    
T  36076909 taacttgatttcaagtatcggcttgatcccataagtaataaaaggttcgtttaggtcccttaactttatttaaagtat 36076986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 15158349 - 15158424
Alignment:
Q  222 acttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||| |||||||||||||||| ||||| |||||| | ||  |||||||| |||||| ||||||| ||||||    
T  15158349 acttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttaggtcccttaaatttatttcaagtat 15158424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 49220425 - 49220348
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| |||| |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49220425 taacttaatttcaagtatcggtttggtcccataaataataaaaagtctgtttaggtcccttaactttatttaaagtat 49220348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 31071283 - 31071180
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||||||||||| ||||||  |  | ||||||||||| ||||||||||||| || |||||||||||| | |||||||||||| |||||||||||||||||    
T  31071283 taggcttaaatgctcttttcttcccttaacttgatttcaagtatcggtttgatcccataaataataaaaggtctgtttaggtcccttaactttatttaaa 31071184  T
Q  293 gtat 296  Q
    ||||    
T  31071183 gtat 31071180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 49220138 - 49220211
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaa 292  Q
    |||||||||||||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||||||||||    
T  49220138 taacttgattttaagtatcggtttagtcccataaataataaaaagtccgtttaggtcctttaactttatttaaa 49220211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 11047347 - 11047243
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||||||||||||||  ||| |  | ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| |||||||||||||||||    
T  11047347 taggcttaaatgttcaattggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaa 11047248  T
Q  293 gtatt 297  Q
    |||||    
T  11047247 gtatt 11047243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 291
Target Start/End: Original strand, 31070947 - 31071045
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 291  Q
    |||||||||||||||||||| |  | ||||||||||||||||||| |||||||| ||||| |||||| |  || ||||| || ||||||||||||||||    
T  31070947 taggcttaaatgttcttttggtcccttaacttgattttaagtatcagtttggtcccataagtaataaaagatccgtttaagtcccttaactttatttaa 31071045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 28253783 - 28253706
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| ||||||||| |||||| |||||||||||| | ||||| ||| || |||||||||||||||||||||    
T  28253783 taacttgatttcaagtatcggattggtcccataaataataaaaggtctgattaagtcccttaactttatttaaagtat 28253706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 296
Target Start/End: Original strand, 18733945 - 18734042
Alignment:
Q  199 ttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||| ||||||||| |  | ||||||||||| ||||||| |||||||| ||| |||| ||| ||||||||||| || |||||||||||||||||||||    
T  18733945 ttaaacgttcttttggtctcttaacttgatttcaagtatcagtttggtcccat-aatagtaaaaagtctgtttaagtcccttaactttatttaaagtat 18734042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 52857000 - 52857077
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| |||| |||||||||||||||| ||||| |||||| | ||| |||||| | |||||||||||||||||||||    
T  52857000 taacttaatttcaagtatcggtttggtcccataagtaataaaaggtccgtttagataccttaactttatttaaagtat 52857077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 18734238 - 18734154
Alignment:
Q  193 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc 277  Q
    |||| |||||||| |||||||||    |||||| |||||||||||||| |||||| | ||| |||||| ||||||||||||||||    
T  18734238 atagacttaaatgctcttttgatccattaactttattttaagtatcggcttggtcccttaagtaataaaaagtctgtttaggtcc 18734154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 46453196 - 46453140
Alignment:
Q  241 tttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||||| |||||| ||||| |||||||| |||||||||||||||||||||    
T  46453196 tttggtctcataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 46453140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 4953453 - 4953392
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 294  Q
    |||||| ||||||| ||||| |||||| ||||||||||| || |||||||||||||||||||    
T  4953453 gtatcgttttggtcccataagtaataaaaagtctgtttaagtcccttaactttatttaaagt 4953392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 11046992 - 11047068
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 296  Q
    ||||||||||| | |||||||||||||| |||||  ||||| | |||  |||||||| |||||||||||| ||||||    
T  11046992 taacttgatttcatgtatcggtttggtcccataagaaataaaaggtccctttaggtctttaactttatttcaagtat 11047068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 26988829 - 26988906
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| |||| ||||||| |||| ||| ||||| |||||| | |||  ||||||||| |||||||||||||||||||    
T  26988829 taactttatttcaagtatcagttttgtcccataagtaataaaatgtccttttaggtcccttaactttatttaaagtat 26988906  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 194 - 296
Target Start/End: Complemental strand, 36194996 - 36194893
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaa 292  Q
    |||||||||||| ||||||  |  | |||||||||||||||||||||||||||| |||||||||| | || || |||||||||| |||||||||||||||    
T  36194996 taggcttaaatgctcttttagtcccttaacttgattttaagtatcggtttggtcccataaataatcaaaaatccgtttaggtcctttaactttatttaaa 36194897  T
Q  293 gtat 296  Q
    ||||    
T  36194896 gtat 36194893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 36194624 - 36194728
Alignment:
Q  193 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 291  Q
    ||||||||||||| ||||||  |  | ||||||||||| |||||||| ||||||| ||||| |||||| |||||||||||| | ||||||||||||||||    
T  36194624 ataggcttaaatgctcttttagtcccttaacttgatttcaagtatcgttttggtcccataagtaataaaaagtctgtttagatcccttaactttatttaa 36194723  T
Q  292 agtat 296  Q
    |||||    
T  36194724 agtat 36194728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 296
Target Start/End: Original strand, 31933272 - 31933374
Alignment:
Q  195 aggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaag 293  Q
    ||||||||||||||||||| |  | ||| |||||||||||||| ||||||||| ||||| |||||| | |||| ||||| | ||||||||||||||||||    
T  31933272 aggcttaaatgttcttttggtcccttaatttgattttaagtattggtttggtcccataagtaataaaaggtctatttagatcccttaactttatttaaag 31933371  T
Q  294 tat 296  Q
    |||    
T  31933372 tat 31933374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 12655064 - 12654967
Alignment:
Q  200 taaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| |||||||||  | ||||||||||| |||||||||||||||| ||||| |||||| |  || |||||||| |||||||||||||||||||||    
T  12655064 taaatgctcttttgatcccttaacttgatttcaagtatcggtttggtcccataagtaataaaagttccgtttaggtcccttaactttatttaaagtat 12654967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 31933641 - 31933537
Alignment:
Q  193 ataggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaa 291  Q
    ||||||||||||| ||||||| |  | ||||||||||| |||||||||||||||| ||||| |||||| |||||  ||||| |||  |||||||||||||    
T  31933641 ataggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttagatccgctaactttatttaa 31933542  T
Q  292 agtat 296  Q
    |||||    
T  31933541 agtat 31933537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 13557482 - 13557405
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||| |||||||| ||||||||| |||||||||||    
T  13557482 taacttgatttcaagtatcggtttggtcccataagtaataaaaggtccgtttaggtcccttaacttcatttaaagtat 13557405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 12654703 - 12654802
Alignment:
Q  198 cttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttag-gtccttaactttatttaaagtat 296  Q
    |||||||| ||||||| |  | |||||| |||| |||| ||||||||||| |||||||||||| | |||  |||||  ||||||||||||||||||||||    
T  12654703 cttaaatgctcttttggtcccttaactttatttcaagtgtcggtttggtcccataaataataaaaggtccatttagtttccttaactttatttaaagtat 12654802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 21015261 - 21015198
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  21015261 gtatcgctttggtcccataagtaataaaaagtctgtttgggtcccttaactttatttaaagtat 21015198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 18847391 - 18847467
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    ||||||||||| |||||||| || |||||||||| |||||| | || |||||| |||| |||||||||||||||||||    
T  18847391 taacttgatttcaagtatcgatt-ggtctcataagtaataaaaggtttgtttatgtcccttaactttatttaaagtat 18847467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 10134646 - 10134709
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| | ||| |||||||||| |||||||||||||||||||    
T  10134646 gtatcgctttggtcccataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 10134709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 13557164 - 13557221
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc 277  Q
    ||||||||||| |||||||||||||||| ||||| |||||| | ||  ||||||||||    
T  13557164 taacttgatttcaagtatcggtttggtcccataagtaataaaaggttcgtttaggtcc 13557221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 18847677 - 18847605
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaa 291  Q
    ||||||||||| ||||||| |||| ||| ||||| |||||| |||||| |||| || |||||||||| |||||    
T  18847677 taacttgatttcaagtatcagttttgtcccataagtaataaaaagtctatttaagtcccttaactttgtttaa 18847605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 8462871 - 8462949
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtatt 297  Q
    ||||||||||| || |||| |||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  8462871 taacttgatttcaaatatcagtttggtcccataaataataaaatgtctgtttaggtcctttaactttatttaaagtatt 8462949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 32871633 - 32871711
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataat-aagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||||||||||||||| ||||||||| |||||||||| || || ||||||||||| |||||||||||||||||||||    
T  32871633 taacttgattttaagtattggtttggtcccataaataataaaaaaatctgtttaggtcccttaactttatttaaagtat 32871711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 6000503 - 6000580
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||||||||||||| ||||| |||||| |||||  ||||||| |||||||||||||||||||||    
T  6000503 taacttgatttcaagtatcggtttggtcccataagtaataaaaagtccatttaggtcccttaactttatttaaagtat 6000580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 4133180 - 4133105
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagt 294  Q
    ||||||||||| |||||| |||||| |||||||| |||||| | ||| |||||||| |||||||||||||||||||    
T  4133180 taacttgatttcaagtattggtttgatctcataagtaataaaatgtccgtttaggtcccttaactttatttaaagt 4133105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Original strand, 43392322 - 43392395
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    ||||||||||| |||||| ||||||||| |||||||| ||| | ||| |||||||| |||||||||||||||||    
T  43392322 taacttgatttcaagtattggtttggtcccataaatattaaaaggtccgtttaggtcccttaactttatttaaa 43392395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 16962882 - 16962945
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||||||||| |||||| | ||| |||||||||| |||||||||||||||||||    
T  16962882 gtatcgctttggtctcataagtaataaaaggtccgtttaggtccattaactttatttaaagtat 16962945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Complemental strand, 6000783 - 6000713
Alignment:
Q  227 attttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||| ||||||| ||||||||  |||| |||||| ||||| |||||||||| |||||||||||||||||||    
T  6000783 atttcaagtatcagtttggtcctataagtaataaaaagtccgtttaggtcccttaactttatttaaagtat 6000713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 25731916 - 25732018
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||||||||||| ||||||| |  | ||||||||||| |||||||||||| ||| ||||| |||||| | ||||| |||| | ||||||||| |||| ||    
T  25731916 taggcttaaatgctcttttggtcccttaacttgatttcaagtatcggtttagtcccataagtaataaaaggtctgcttagatcccttaacttgatttcaa 25732015  T
Q  293 gta 295  Q
    |||    
T  25732016 gta 25732018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Complemental strand, 18417559 - 18417482
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||| |||| ||||||||||||| ||  ||||||||||| | |||  ||||||| |||||||||||||||||||||    
T  18417559 taactttatttcaagtatcggtttgatcctataaataataaaaggtccatttaggtcccttaactttatttaaagtat 18417482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 32389781 - 32389708
Alignment:
Q  224 ttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    ||||||| ||||||| ||||||||  |||| |||||| | ||||||||| |||| |||||||||||||||||||    
T  32389781 ttgatttcaagtatcagtttggtccaataagtaataaaatgtctgtttaagtcccttaactttatttaaagtat 32389708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 296
Target Start/End: Original strand, 24846289 - 24846345
Alignment:
Q  241 tttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||||| |||||| | ||| |||||||| |||||||||||||||||||||    
T  24846289 tttggtctcataagtaataaaaggtccgtttaggtcccttaactttatttaaagtat 24846345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 30284246 - 30284182
Alignment:
Q  233 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||| ||||||||||||| |||||| | ||| |||||||| ||||||||||||| |||||||    
T  30284246 agtatcgctttggtctcataagtaataaaatgtccgtttaggtcccttaactttattgaaagtat 30284182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 30283956 - 30284018
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtccttaactttatttaaagtat 296  Q
    |||||| ||||||||||||| |||||| | ||| ||||||  ||||||||| |||||||||||    
T  30283956 gtatcgttttggtctcataagtaataaaaggtccgtttagtcccttaacttcatttaaagtat 30284018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 24485864 - 24485803
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagt 294  Q
    |||||| ||||||| ||||| |||||| ||||| ||||| |||| |||||||||||||||||    
T  24485864 gtatcgttttggtcccataagtaataaaaagtccgtttaagtcccttaactttatttaaagt 24485803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 37691719 - 37691796
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| ||||||||||||| |  ||||| |||||| ||||| | ||| || |||||| ||||||||||||||    
T  37691719 taacttgatttcaagtatcggtttgattccataagtaataaaaagtccgattaagtcccttaattttatttaaagtat 37691796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 472635 - 472699
Alignment:
Q  233 agtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||| ||||||||||||| |||||| | ||  |||||||| ||||||||||||| |||||||    
T  472635 agtatcgttttggtctcataagtaataaaaggtgcgtttaggtcccttaactttattgaaagtat 472699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 18508851 - 18508788
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttagg-tccttaactttatttaaagtat 296  Q
    |||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  18508851 gtatcgatttggtcccataaataataaaaagtctgtttaggttccttaactttatttaaagtat 18508788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 9989980 - 9990056
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||||||| |||||||||||| ||||| |||||| | || ||||||||| |||||||||||||||||||||    
T  9989980 taacttgattttaagaatcggtttggtc-cataattaataaaaggtatgtttaggtcccttaactttatttaaagtat 9990056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 296
Target Start/End: Original strand, 8417561 - 8417660
Alignment:
Q  198 cttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    |||||||| ||||||| |  | ||||||||||| ||||||||||||| ||||| || |||||| |  || |||||||| |||||||||||||||||||||    
T  8417561 cttaaatgctcttttggtcccttaacttgatttcaagtatcggtttgatctcacaagtaataaaagttccgtttaggtcccttaactttatttaaagtat 8417660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 296
Target Start/End: Complemental strand, 9990262 - 9990189
Alignment:
Q  224 ttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||||||| ||||| | ||||||||||| | |  ||||||||||| |||||||||||||||||||||    
T  9990262 ttgattttaagtatcagtttgatttcataaataatgaaagatctgtttaggtcccttaactttatttaaagtat 9990189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 194 - 297
Target Start/End: Complemental strand, 18968871 - 18968767
Alignment:
Q  194 taggcttaaatgttcttttgattgcgtaacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaa 292  Q
    |||| ||||||| ||  |||||| | ||||||||||| ||||||||||||| || |||||||||||| | || ||||| | | |||||||||||| ||||    
T  18968871 taggtttaaatgctcaattgattccttaacttgatttcaagtatcggtttgatcccataaataataaaaggtatgtttggatcccttaactttatataaa 18968772  T
Q  293 gtatt 297  Q
    |||||    
T  18968771 gtatt 18968767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 35463892 - 35463829
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||||||    
T  35463892 gtatcgctttggtcccataagtaataaaaagtctgtttcggtcccttaactttatttaaagtat 35463829  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 296
Target Start/End: Original strand, 18968533 - 18968610
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtat 296  Q
    ||||||||||| |||||| |||||||| ||||||  ||||| |  || |||||||| |||||||||||||||||||||    
T  18968533 taacttgatttcaagtattggtttggtttcataatcaataaaagatccgtttaggtcccttaactttatttaaagtat 18968610  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 1211738 - 1211660
Alignment:
Q  220 taacttgattttaagtatcggtttggtctcataaataataagaagtctgtttaggt-ccttaactttatttaaagtatt 297  Q
    ||||||||||| ||||||| |||||||||||||| |||||| |  ||||||||| | ||||||||||||||||||||||    
T  1211738 taacttgatttcaagtatctgtttggtctcataagtaataaaagatctgtttagatcccttaactttatttaaagtatt 1211660  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 26001 - 26064
Alignment:
Q  234 gtatcggtttggtctcataaataataagaagtctgtttaggtcc-ttaactttatttaaagtat 296  Q
    |||||| ||||||| ||||| |||||| |||| |||||| |||| |||||||||||||||||||    
T  26001 gtatcgctttggtcccataagtaataaaaagtttgtttaagtcccttaactttatttaaagtat 26064  T

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