View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_30 (Length: 281)
Name: NF12881_low_30
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 6300788 - 6300599
Alignment:
| Q |
18 |
acaccaagagttatgaaaagctgttatgaagaattcaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtatttcaataggtgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6300788 |
acaccaagagttatgaaaagctgttatgaagaattcaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtatttcaataggtgat |
6300689 |
T |
|
| Q |
118 |
tgaaaactacaacagactttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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| T |
6300688 |
tgaaaactacaaaagactttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
6300599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 25995529 - 25995340
Alignment:
| Q |
18 |
acaccaagagttatgaaaagctgttatgaagaattcaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtatttcaataggtgat |
117 |
Q |
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| T |
25995529 |
acaccaagagttatgaaaagctgttatgaagaattgaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtattccaataggtgat |
25995430 |
T |
|
| Q |
118 |
tgaaaactacaacagactttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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| T |
25995429 |
tgaaaaccacaaaagactttaaaggggtatattagaaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
25995340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 24744049 - 24744239
Alignment:
| Q |
18 |
acaccaagagttatgaaaagctgttatgaagaattcaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtatttcaataggtgat |
117 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24744049 |
acaccaagagttatgaaaagctgttatgaagaattgaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtattccaataggtgat |
24744148 |
T |
|
| Q |
118 |
tgaaaactacaacagactttaaaggggtatattaggaataacagtgt-aaaagtggttagttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24744149 |
tgaaaaccacaaaagactttaaaggggtatattaggaataacagtgtaaaaagtggttagttttgcttatatttgagaccaaagattgatg |
24744239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 4204793 - 4204895
Alignment:
| Q |
101 |
gtatttcaataggtgattgaaaactacaacagactttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaag |
200 |
Q |
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||||| ||| ||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4204793 |
gtattccaagaggtgtttgaaaaccacaaaagactttaaaggggtatattaggaataacagcgtaaaagtggttagttttgcttatatttgtgaccaaag |
4204892 |
T |
|
| Q |
201 |
att |
203 |
Q |
| |
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||| |
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|
| T |
4204893 |
att |
4204895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 40285468 - 40285279
Alignment:
| Q |
18 |
acaccaagagttatgaaaagctgttatgaagaattcaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtatttcaataggtgat |
117 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40285468 |
acaccaagagttatgaaaagttgttatgaagaattgaaatgaatgcattatggagaattgaattgaaatgtattggtgtacgtgtattccaataggtgat |
40285369 |
T |
|
| Q |
118 |
tgaaaactacaacagactttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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||||| | |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40285368 |
tgaaatccacaaaagactttaaaggggtatattaggaataatagtgtaaaagtggttaattttgcttatatttgtgaccaaagattgatg |
40285279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 7306516 - 7306546
Alignment:
| Q |
177 |
ttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7306516 |
ttttgcttatatttgtgaccaaagattgatg |
7306546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Complemental strand, 16441673 - 16441643
Alignment:
| Q |
177 |
ttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
16441673 |
ttttgcttatatttgtgaccaaagattgatg |
16441643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 10366936 - 10366864
Alignment:
| Q |
135 |
tttaaaggggtatattaggaataacagtgtaaaagtggttagttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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|||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
10366936 |
tttaaaagggtttattaggaataacattgtaaaagtggttagttttgcttatatttgtgaccaaacattgatg |
10366864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 6126732 - 6126762
Alignment:
| Q |
177 |
ttttgcttatatttgtgaccaaagattgatg |
207 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
6126732 |
ttttgcttatatttgtgaccaaagattgatg |
6126762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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