View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_34 (Length: 244)

Name: NF12881_low_34
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_34
NF12881_low_34
[»] chr3 (15 HSPs)
chr3 (10-226)||(19603632-19603848)
chr3 (10-220)||(19581314-19581524)
chr3 (38-220)||(19563426-19563613)
chr3 (10-199)||(19593459-19593648)
chr3 (38-220)||(19549180-19549363)
chr3 (15-220)||(19538989-19539198)
chr3 (41-192)||(19609555-19609705)
chr3 (41-214)||(19653547-19653720)
chr3 (37-222)||(19557176-19557363)
chr3 (39-201)||(19617208-19617373)
chr3 (98-208)||(19612244-19612354)
chr3 (59-204)||(19626093-19626238)
chr3 (59-207)||(19646593-19646741)
chr3 (117-220)||(18479257-18479360)
chr3 (115-220)||(32150919-32151025)
[»] chr6 (1 HSPs)
chr6 (38-214)||(18025124-18025301)
[»] chr7 (10 HSPs)
chr7 (93-220)||(21604976-21605103)
chr7 (54-220)||(21601399-21601564)
chr7 (38-203)||(24203796-24203961)
chr7 (42-198)||(21611175-21611331)
chr7 (38-197)||(21594261-21594420)
chr7 (38-204)||(21587223-21587389)
chr7 (119-210)||(21581832-21581923)
chr7 (55-196)||(12421451-12421592)
chr7 (145-196)||(21820789-21820840)
chr7 (40-110)||(21581736-21581808)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 226
Target Start/End: Original strand, 19603632 - 19603848
Alignment:
Q  10 agaagcaaaggtaaaatcatgtcgtggggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603632 agaagcaaaggtaaaatcatgtcgtggggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa 19603731  T
Q  110 ttttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603732 ttttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttg 19603831  T
Q  210 aacctcaagtttatatt 226  Q
    |||||||||||||||||    
T  19603832 aacctcaagtttatatt 19603848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 220
Target Start/End: Original strand, 19581314 - 19581524
Alignment:
Q  10 agaagcaaaggtaaaatcatgtcgtggggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa 109  Q
    |||||||||||||||||||| || || | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||    
T  19581314 agaagcaaaggtaaaatcatatcatgag-tactatataatgaagttgaagtttgctatgcatattgcgagaacaaaaaataatagagtcttaagataaaa 19581412  T
Q  110 ttttaac-aaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaacttt 208  Q
    |||| || |||||||||||||||||||||| || || ||||||||||||||||||| |||||  ||||||||| |||  |||||||||||||||||||||    
T  19581413 ttttcacaaaaaaatggcaaaacacatttcccagtactttctcttgggaattttattcattgcattggttctaacttcaggtaagaaacatatgaacttt 19581512  T
Q  209 gaacctcaagtt 220  Q
     ||||| |||||    
T  19581513 caaccttaagtt 19581524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 19563426 - 19563613
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa----ttttaacaaaa-aatggcaaaaca 132  Q
    ||||||||||||||| |||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||    | || |||||| ||||||||||||    
T  19563426 gtactatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaattcttcacaaaaaaatggcaaaaca 19563525  T
Q  133 catttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacctcaagtt 220  Q
    |||||| ||||| | |||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||| |||||    
T  19563526 catttcccaatactgtctcttgggaattttatgcattgtgttgattctagcttcaggtaagaaacatatgaactttgaaccttaagtt 19563613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 19593459 - 19593648
Alignment:
Q  10 agaagcaaaggtaaaatcatgtcgtggggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa 109  Q
    |||||||||||||||||||| || || | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||  |||||||    
T  19593459 agaagcaaaggtaaaatcatatcatgag-tactatataatgaagttgaagtttgctatacatattgcgagaacaaacaataatagagttcttggataaaa 19593557  T
Q  110 ttttaac-aaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacat 199  Q
      || || |||||||||||  ||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||  ||||||||||||    
T  19593558 aattcacaaaaaaatggcaggacacatttcccaatattttctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaacat 19593648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 220
Target Start/End: Original strand, 19549180 - 19549363
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaa-aatggcaaaacacatt 136  Q
    ||||||||||||||| |||||||||||||| |||||| | ||||||||  ||||||||||||||| ||||||| || |||||| ||||||||||||||||    
T  19549180 gtactatataatgaacttgaagtttgttattcatatttcaagaacaaaagataatagagttctaaaataaaatcttcacaaaaaaatggcaaaacacatt 19549279  T
Q  137 tcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacctcaagtt 220  Q
    || || || | ||||||||||||||||||||||| |||||||||| |||  ||||||||||||| ||||||||||||| |||||    
T  19549280 tctcagtactgtctcttgggaattttatgcattgcgttggttctaacttcaggtaagaaacatacgaactttgaaccttaagtt 19549363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 19538989 - 19539198
Alignment:
Q  15 caaaggtaaaatcatgtcgtggggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaa----t 110  Q
    ||||||||||||||| || || | |||||||||||||| |||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||    |    
T  19538989 caaaggtaaaatcatatcatgag-tactatataatgaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaagaatt 19539087  T
Q  111 tttaacaaaa-aatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttg 209  Q
     || |||||| |||||||||||||||||  || || | |||||| |||||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  19539088 cttcacaaaaaaatggcaaaacacattttccagtactgtctcttaggaattttatgcattgcgttggttctagcttcaggtaagaaacatatgaactttg 19539187  T
Q  210 aacctcaagtt 220  Q
    ||||| |||||    
T  19539188 aaccttaagtt 19539198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 19609555 - 19609705
Alignment:
Q  41 ctatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgc 140  Q
    |||||||||||| || ||||||| | |||||||||||| ||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||| |    
T  19609555 ctatataatgaactttaagtttgctgtgcatattgcgaaaacaaacaataatagagctctaagataaaatcttcacaaaa-atggcaaaacacatttccc 19609653  T
Q  141 aatattttctcttgggaattttatgcattgtgttggttctagctttgggtaa 192  Q
    | |||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  19609654 agtattgtctcttgggaattttatgcattgtgttggttctagctttaggtaa 19609705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 41 - 214
Target Start/End: Original strand, 19653547 - 19653720
Alignment:
Q  41 ctatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgc 140  Q
    |||||||||||| ||| |||||  |||||||||||||| ||||||  ||||||||| | ||||||||||| || | |||||||||||||||||||||| |    
T  19653547 ctatataatgaacttggagttttctatgcatattgcgaaaacaaaagataatagagctataagataaaatcttcataaaaaatggcaaaacacatttccc 19653646  T
Q  141 aatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacct 214  Q
    | || | |||||||| |||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  19653647 agtactgtctcttggcaattttatgcattgcgttggttctaactttaggtaagaaacatatgaactttgaacct 19653720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 222
Target Start/End: Original strand, 19557176 - 19557363
Alignment:
Q  37 ggtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaa--tggcaaaacaca 134  Q
    |||| |||||||| || |||||||||||||| |||||| ||||||||||  ||||||||||||||||||||||| || ||||||||  || | |||| ||    
T  19557176 ggtagtatataataaacttgaagtttgttattcatattacgagaacaaaagataatagagttctaagataaaatcttcacaaaaaaaatgtcgaaaccca 19557275  T
Q  135 tttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacctcaagttta 222  Q
    |||| ||||||| ||||||||||||||||| |||||  |||||||||||||  ||||||||||||||||||||| ||||| |||||||    
T  19557276 tttcccaatattgtctcttgggaattttatacattgccttggttctagcttcaggtaagaaacatatgaactttcaaccttaagttta 19557363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 201
Target Start/End: Original strand, 19617208 - 19617373
Alignment:
Q  39 tactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaatttt----aacaaaaaatggcaaaacaca 134  Q
    |||||||||||||| |||||||||| |||||||||||||| ||||||| |||||| | | | |||||||||| ||    || |||||||||||||| | |    
T  19617208 tactatataatgaacttgaagtttgctatgcatattgcgaaaacaaacgataataaact-caaagataaaatcttcaaaaaaaaaaaatggcaaaatata 19617306  T
Q  135 tttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatat 201  Q
    |||  |||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||    
T  19617307 ttttccaatattttctctttggagttttatgcattgcgttggttctagcttcgggtaagaaacatat 19617373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 98 - 208
Target Start/End: Original strand, 19612244 - 19612354
Alignment:
Q  98 tctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaac 197  Q
    ||||||||||||| || |||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||| ||||||||||||||  ||||||||||    
T  19612244 tctaagataaaatcttcacaaaaaatggcaaaacacatttcccaatattgtcttttgggaattttctgcattgcgttggttctagcttcaggtaagaaac 19612343  T
Q  198 atatgaacttt 208  Q
    |||| ||||||    
T  19612344 atataaacttt 19612354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 204
Target Start/End: Original strand, 19626093 - 19626238
Alignment:
Q  59 gtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaa 158  Q
    ||||| ||||||||||| || ||||||  ||||||||| | ||||||||||| || | |||||||||||||||||||||| || || | ||| |||| ||    
T  19626093 gtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttcataaaaaatggcaaaacacatttctcattactgtctattggcaa 19626192  T
Q  159 ttttatgcattgtgttggttctagctttgggtaagaaacatatgaa 204  Q
    |||||||||||| |||||||||| |||  |||||||||||||||||    
T  19626193 ttttatgcattgcgttggttctaacttcaggtaagaaacatatgaa 19626238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 207
Target Start/End: Original strand, 19646593 - 19646741
Alignment:
Q  59 gtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaa 158  Q
    ||||| ||||||||||| || ||||||  ||||||||| | ||||||||||| || | |||||||||||||| ||||||  || || | |||||| | ||    
T  19646593 gtttgctatgcatattgtgaaaacaaaagataatagagctataagataaaatcttcataaaaaatggcaaaaaacattttccagtactgtctcttagcaa 19646692  T
Q  159 ttttatgcattgtgttggttctagctttgggtaagaaacatatgaactt 207  Q
    |||||||||||| ||||||||||||||  ||||||||| ||||||||||    
T  19646693 ttttatgcattgcgttggttctagcttcaggtaagaaatatatgaactt 19646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 220
Target Start/End: Complemental strand, 18479360 - 18479257
Alignment:
Q  117 aaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacctca 216  Q
    |||||||||||||||||||||| ||  | | | ||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||| ||||| |    
T  18479360 aaaaaatggcaaaacacatttcccagcactgtttcttgggaattttatgcattgcgttggttctagcttcaggtaagaaacatatgaactttcaacctta 18479261  T
Q  217 agtt 220  Q
    ||||    
T  18479260 agtt 18479257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 32151025 - 32150919
Alignment:
Q  115 acaaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttc-tagctttgggtaagaaacatatgaactttgaacc 213  Q
    ||||||||||||||||||||||||  | || | |||||||| |||||||||||||| |||||||| || |||    ||||||||||||||||||||||||    
T  32151025 acaaaaaatggcaaaacacatttccgagtactgtctcttggcaattttatgcattgcgttggttcttaacttcaattaagaaacatatgaactttgaacc 32150926  T
Q  214 tcaagtt 220  Q
    | |||||    
T  32150925 ttaagtt 32150919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 18025124 - 18025301
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaa-aatggcaaaacacatt 136  Q
    ||||||||||||||| || ||||||||||| ||||||| |||||||||  ||||||||||||||||||||||| || |||||| |||||||||||| |||    
T  18025124 gtactatataatgaatttaaagtttgttattcatattgggagaacaaaagataatagagttctaagataaaatcttcacaaaaaaatggcaaaacatatt 18025223  T
Q  137 tcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacct 214  Q
    || ||||||| ||| |||| |||||||||||||| |||||||||||| |  ||||||||||||||||||||| |||||    
T  18025224 tctcaatattgtctgttggcaattttatgcattgcgttggttctagcctcaggtaagaaacatatgaactttcaacct 18025301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 93 - 220
Target Start/End: Original strand, 21604976 - 21605103
Alignment:
Q  93 agagttctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaa 192  Q
    ||||||| |||||||||| || ||||||||||||||| |||||||| |||||||||||||||||| |||| ||||||| |||||||| |||||  |||||    
T  21604976 agagttcaaagataaaatcttcacaaaaaatggcaaaccacatttcccaatattttctcttgggacttttgtgcattgcgttggttcaagcttcaggtaa 21605075  T
Q  193 gaaacatatgaactttgaacctcaagtt 220  Q
    ||||||||| || ||||||||| |||||    
T  21605076 gaaacatattaattttgaaccttaagtt 21605103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 21601399 - 21601564
Alignment:
Q  54 ttgaagtttgttatgcatat--tgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctc 151  Q
    |||||||||| |||||||||  ||| | ||||||  ||||||||| | ||||||| ||| || |||| ||||||||||| | ||||| ||||||||||||    
T  21601399 ttgaagtttgctatgcatatattgcaaaaacaaaagataatagagctttaagatacaatcttcacaagaaatggcaaaatatatttctcaatattttctc 21601498  T
Q  152 ttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttgaacctcaagtt 220  Q
    |||||| |||||||||||| ||||||||| |||| |||||||   ||| |||||||||||||| |||||    
T  21601499 ttgggacttttatgcattgcgttggttctggcttcgggtaag---catctgaactttgaaccttaagtt 21601564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 24203961 - 24203796
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacattt 137  Q
    ||||||||||||||| || ||| ||| ||| |||||| |  ||||| |  |||||||||||  ||||||||||||| ||||||||||| |||||||||||    
T  24203961 gtactatataatgaacttaaagcttgctatccatattacacgaacataagataatagagttgaaagataaaattttcacaaaaaatggaaaaacacattt 24203862  T
Q  138 cgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatga 203  Q
      |||| ||||||||||||| |||| |||||| || | || || |||| |||||||||||||||||    
T  24203861 gccaatcttttctcttgggacttttttgcattatggttgtcctggcttcgggtaagaaacatatga 24203796  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 21611175 - 21611331
Alignment:
Q  42 tatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaa--tggcaaaacacatttcg 139  Q
    ||||||||||| ||||||| || ||||  |||||||||| ||||  |||| |||||||||||||||||| | |||||||||  |||||||||||||||      
T  21611175 tatataatgaacttgaagtatgctatg--tattgcgagagcaaaatataacagagttctaagataaaatctaaacaaaaaaaatggcaaaacacattttc 21611272  T
Q  140 caatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaaca 198  Q
    |||||||||||||||||| |||| |||||||||||  | ||| |||  |||||||||||    
T  21611273 caatattttctcttgggagttttgtgcattgtgtttctcctatcttcaggtaagaaaca 21611331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 21594420 - 21594261
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacattt 137  Q
    ||||||||||||||  ||||||||||   |||||| | ||||||||||  ||||||||||||||||||||||| |  |  ||||||||||||||| ||      
T  21594420 gtactatataatgagcttgaagtttgcattgcataatacgagaacaaaatataatagagttctaagataaaatctacaagaaaaatggcaaaacatatag 21594321  T
Q  138 cgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaac 197  Q
    | ||||||||| |||||| | |||| | ||||| |||||||||||||| |||||||||||    
T  21594320 cccaatattttttcttggcacttttgttcattgcgttggttctagcttcgggtaagaaac 21594261  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 21587389 - 21587223
Alignment:
Q  38 gtactatataatgaagttgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacattt 137  Q
    |||||||||||| || | ||||||||  ||||||| ||| ||||||||  ||||||||||||||||||||||| | ||  |||||||| |||||| |||     
T  21587389 gtactatataatcaactagaagtttgcaatgcataatgcaagaacaaaagataatagagttctaagataaaatctaaaagaaaaatgggaaaacatattc 21587290  T
Q  138 cgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaa 204  Q
       ||||| || |||||| | |||| | ||||  |||||||||||| | ||||||||||||||||||    
T  21587289 tcaaatatcttttcttggcacttttgttcattccgttggttctagcatcgggtaagaaacatatgaa 21587223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 21581832 - 21581923
Alignment:
Q  119 aaaatggcaaaacacatttcgcaatattttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaacatatgaactttga 210  Q
    |||||||||||||| ||||| |||||||||||| ||||| |||| | ||||| |||||  ||| |||||||||||||| |||||||||||||    
T  21581832 aaaatggcaaaacatatttcccaatattttctcgtgggacttttgttcattgcgttggccctaactttgggtaagaaatatatgaactttga 21581923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 12421592 - 12421451
Alignment:
Q  55 tgaagtttgttatgcatattgcgagaacaaacaataatagagttctaagataaaattttaacaaaaaatggcaaaacacatttcgcaatattttctcttg 154  Q
    ||||||||| |||||||||  | ||||||||  | ||||||| |||||||| |||| || |||||||||||||| |||| |||  | || |||||| ||     
T  12421592 tgaagtttgctatgcatatctcaagaacaaaataaaatagagctctaagatgaaatcttcacaaaaaatggcaacacactttttccgatcttttcttttc 12421493  T
Q  155 ggaattttatgcattgtgttggttctagctttgggtaagaaa 196  Q
    ||| |||||||||||| ||| || || |||| ||||||||||    
T  12421492 ggacttttatgcattgcgtttgtcctggcttcgggtaagaaa 12421451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 196
Target Start/End: Original strand, 21820789 - 21820840
Alignment:
Q  145 ttttctcttgggaattttatgcattgtgttggttctagctttgggtaagaaa 196  Q
    ||||||||| |||||||||||||||||| |||| |||||||  |||||||||    
T  21820789 ttttctctttggaattttatgcattgtgctggtcctagcttctggtaagaaa 21820840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 21581736 - 21581808
Alignment:
Q  40 actatataatgaagttgaagtttgttat--gcatattgcgagaacaaacaataatagagttctaagataaaat 110  Q
    ||||||||||||| |||||||||| |||  | ||| | | ||||||||  |||||||||||||||||||||||    
T  21581736 actatataatgaacttgaagtttgctatatgaataatacaagaacaaaagataatagagttctaagataaaat 21581808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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