View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_37 (Length: 239)

Name: NF12881_low_37
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_37
NF12881_low_37
[»] chr1 (11 HSPs)
chr1 (1-224)||(30367150-30367373)
chr1 (2-221)||(13205386-13205602)
chr1 (1-221)||(13069236-13069453)
chr1 (2-221)||(13008115-13008331)
chr1 (1-221)||(13101915-13102132)
chr1 (1-221)||(13214403-13214620)
chr1 (4-224)||(13162445-13162665)
chr1 (4-100)||(13130876-13130972)
chr1 (2-93)||(13005874-13005965)
chr1 (12-224)||(13095323-13095535)
chr1 (117-224)||(13080038-13080145)
[»] chr6 (2 HSPs)
chr6 (1-224)||(31376422-31376645)
chr6 (1-224)||(31385323-31385547)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 30367150 - 30367373
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30367150 gtttcgatttgaaggaccctgattcacaaacacaagctttatcgctactgctgatccaatgaacgttaaccacatcgcaagcaagaattttggcaactac 30367249  T
Q  101 ggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30367250 gggagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 30367349  T
Q  201 attcaattctcaaaaggaaaagct 224  Q
    ||||||||||||||||||||||||    
T  30367350 attcaattctcaaaaggaaaagct 30367373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 13205602 - 13205386
Alignment:
Q  2 tttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactacg 101  Q
    ||||||||||||||| ||||||||||||||||||||||||||| |||   ||||||| |||| ||| || |||| ||| |||||||||||||||||||||    
T  13205602 tttcgatttgaaggagcctggttcacaaacacaagctttatcgttacaagtgatccattgaatgttgaccacattgcaggcaagaattttggcaactacg 13205503  T
Q  102 gtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttca 201  Q
    | ||||||||    |||||| ||||||||||||| |||||||||| ||||||| | |||||| ||||| ||||||||||| |  ||||| ||||||||||    
T  13205502 gaagggggtc---caacttcaaagaaatttttgatttttttggagatggtattttaaattctaattccaacgtatggaaacaacagaggacaatgtttca 13205406  T
Q  202 ttcaattctcaaaaggaaaa 221  Q
    |||| |||||||||||||||    
T  13205405 ttcatttctcaaaaggaaaa 13205386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13069236 - 13069453
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    |||| |||||| |||| ||||||||||||||||||||||||| | |||   |||||||||||| ||| |  |||| || |||||||||||||||||||||    
T  13069236 gtttagatttggaggagcctggttcacaaacacaagctttattggtaccagtgatccaatgaatgttgaacacattgcgagcaagaattttggcaactac 13069335  T
Q  101 ggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 200  Q
    || |||||||| ||   |||| ||||||||||||| |||||||||| ||||||| | |||||| ||||||||||||||||| |  ||||| |||||||||    
T  13069336 ggaagggggtccaa---cttcaaagaaatttttgatttttttggagatggtattttaaattctaattcccacgtatggaaacaacagaggacaatgtttc 13069432  T
Q  201 attcaattctcaaaaggaaaa 221  Q
    ||||| |||| ||||||||||    
T  13069433 attcatttcttaaaaggaaaa 13069453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 13008331 - 13008115
Alignment:
Q  2 tttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactacg 101  Q
    ||||||||||||||| | ||||||||||||||||||||||||| |||   |||||| ||||| ||| |  ||||||| ||||||||||||||||||||||    
T  13008331 tttcgatttgaaggagcttggttcacaaacacaagctttatcggtaccagtgatccgatgaatgttgatcacatcgcgagcaagaattttggcaactacg 13008232  T
Q  102 gtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttca 201  Q
    | ||||||||    |||||| ||||||||||||| |||||||||| ||||||| | ||||||  ||||||| |||||||| |  || |  ||||||||||    
T  13008231 gaagggggtc---caacttcaaagaaatttttgatttttttggagatggtattttaaattctagttcccacatatggaaacaacagcgaacaatgtttca 13008135  T
Q  202 ttcaattctcaaaaggaaaa 221  Q
    |||| |||||||||||||||    
T  13008134 ttcatttctcaaaaggaaaa 13008115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13102132 - 13101915
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    |||||||||||||||| ||||||||||||||||  ||||||||| |||   |||||||||||| |||||  |||| || |||||||||||| |||| |||    
T  13102132 gtttcgatttgaaggagcctggttcacaaacactggctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttagcaattac 13102033  T
Q  101 ggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 200  Q
    || ||||||||    ||||||||||| |||||| | ||||||  |||| ||||| | |||||| || || ||||||||||| |  ||||||||||||||     
T  13102032 ggaagggggtc---caacttccaagatattttttatttttttcaaggtagtattttaaattctcatcccgacgtatggaaacaacagagggcaatgttta 13101936  T
Q  201 attcaattctcaaaaggaaaa 221  Q
    |||||  ||||||||||||||    
T  13101935 attcatatctcaaaaggaaaa 13101915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13214620 - 13214403
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    ||||||||||||  || ||||||||||||||||||||||||||| |||   |||||||||||| |||||  |||| || ||||||||||||||||| |||    
T  13214620 gtttcgatttgagtgagcctggttcacaaacacaagctttatcggtaccagtgatccaatgaatgttaatcacattgcgagcaagaattttggcaattac 13214521  T
Q  101 ggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 200  Q
    || |||||  |    ||||||||||| |||||| | |||||||||||| ||||| | |||||| ||||| ||||||| ||| |  ||||| ||||||||     
T  13214520 ggaaggggccc---caacttccaagatattttttatttttttggaggtagtattttaaattctaattccgacgtatgaaaacaacagaggacaatgttta 13214424  T
Q  201 attcaattctcaaaaggaaaa 221  Q
    ||||| |||||||||| ||||    
T  13214423 attcatttctcaaaagaaaaa 13214403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 224
Target Start/End: Complemental strand, 13162665 - 13162445
Alignment:
Q  4 tcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactacggt 103  Q
    ||||||| ||||||||||||||||||||||||||||| ||| |   ||||||||||||||||| |  |||||| |||  |||||||||||||||||||      
T  13162665 tcgatttcaaggaccctggttcacaaacacaagctttgtcggtctagctgatccaatgaacgtgacatacatcacaaagaagaattttggcaactacgcg 13162566  T
Q  104 agggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccac---gtatggaaagagaagagggcaatgtttc 200  Q
    |  |||||    || ||||| || ||||||||| || |||||||| ||||| |||||||||||||| ||   ||||||||| || ||| | |||||||||    
T  13162565 aaagggtc---aaaattccatgatatttttgaagttcttggaggtagtattttcaattctgattccaacgatgtatggaaacaggagaagacaatgtttc 13162469  T
Q  201 attcaattctcaaaaggaaaagct 224  Q
    ||| | ||||   |||||||||||    
T  13162468 atttagttcttggaaggaaaagct 13162445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 100
Target Start/End: Complemental strand, 13130972 - 13130876
Alignment:
Q  4 tcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    ||||||| |||| ||||||||||||||||||||||||||||||   ||||||| ||||||||| ||||||||| |||  ||||||| ||||||||||    
T  13130972 tcgatttcaagggccctggttcacaaacacaagctttatcgctctagctgatcaaatgaacgtgaactacatcacaaagaagaattgtggcaactac 13130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 13005965 - 13005874
Alignment:
Q  2 tttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttgg 93  Q
    |||||||| ||||| ||||| | |||||| |||||||||||||| ||  ||||||||||||||||| || ||||| ||||||||||||||||    
T  13005965 tttcgattcgaagggccctgatacacaaatacaagctttatcgcgaccactgatccaatgaacgttgaccacatcacaagcaagaattttgg 13005874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 13095535 - 13095323
Alignment:
Q  12 aaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactacggtagggggtc 111  Q
    |||| |||||||||||  ||| ||||||||||| |   |||||||||||||||||  |||||||| |||  |||||| ||||||||||||  |  |||||    
T  13095535 aagggccctggttcactgacataagctttatcggtctagctgatccaatgaacgtggactacatcacaaagaagaatgttggcaactacgcgaaagggtc 13095436  T
Q  112 taataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccac---gtatggaaagagaagagggcaatgtttcattcaatt 208  Q
     ||    ||||| || ||||||||| || |||||||| ||||| |||||||||||||| ||   ||||||||| || ||| | |||||||||||| ||||    
T  13095435 aaaa---ttccatgatatttttgaagttcttggaggtagtattttcaattctgattccgacgatgtatggaaacaggagaagacaatgtttcatttaatt 13095339  T
Q  209 ctcaaaaggaaaagct 224  Q
    ||   |||||||||||    
T  13095338 cttggaaggaaaagct 13095323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 13080038 - 13080145
Alignment:
Q  117 acttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttcattcaattctcaaaag 216  Q
    ||||||| |||||||||||| || |||| | ||||||| ||||||  |||||  | | ||||||| |  |||| ||| ||||||||||| | ||||||||    
T  13080038 acttccatgaaatttttgaaattcttggtgttggtattttcaatttagattctaatgaatggaaacaagagagagcattgtttcattcattgctcaaaag 13080137  T
Q  217 gaaaagct 224  Q
    ||||||||    
T  13080138 gaaaagct 13080145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31376645 - 31376422
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaattttggcaactac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  31376645 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgccactgctgatccaattaacgttaaccacatcgcaagcaagaattttggcaactac 31376546  T
Q  101 ggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatgtttc 200  Q
    || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31376545 gggagggggtctatcaacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagaggacaatgtttc 31376446  T
Q  201 attcaattctcaaaaggaaaagct 224  Q
    ||||||||||||||||||||||||    
T  31376445 attcaattctcaaaaggaaaagct 31376422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31385323 - 31385547
Alignment:
Q  1 gtttcgatttgaaggaccctggttcacaaacacaagctttatcgctactgctgatccaatgaacgttaactacatcgcaagcaagaatt----ttggcaa 96  Q
    ||||| ||| |||| | |||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| | ||||||||    | || ||    
T  31385323 gtttcaattcgaagtatcctggttcacaaacacaagctttatcgctactacagacccaatcaacgttaactacatcgccaacaagaattaatttcggtaa 31385422  T
Q  97 ctacggtagggggtctaataacttccaagaaatttttgaattttttggaggtggtattgtcaattctgattcccacgtatggaaagagaagagggcaatg 196  Q
    |||| | |||| |||||    |||||||||| | ||| | || ||| ||||||||||||||||||||||||||||| |||||||| |||| ||| |||||    
T  31385423 ctactggagggagtctag---cttccaagaattgttttatttctttcgaggtggtattgtcaattctgattcccacatatggaaatagaaaaggacaatg 31385519  T
Q  197 tttcattcaattctcaaaaggaaaagct 224  Q
    |||||||||||||| |||| ||||||||    
T  31385520 tttcattcaattctgaaaacgaaaagct 31385547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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