View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12881_low_40 (Length: 236)
Name: NF12881_low_40
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_40 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40513559 - 40513341
Alignment:
| Q |
1 |
ggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513559 |
ggttagagaagaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatttgt |
40513460 |
T |
|
| Q |
101 |
atgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513459 |
atgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagca |
40513360 |
T |
|
| Q |
201 |
agggtttttggttagactt |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40513359 |
agggtttttggttagactt |
40513341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 40482768 - 40482667
Alignment:
| Q |
118 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40482768 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
40482669 |
T |
|
| Q |
218 |
tt |
219 |
Q |
| |
|
|| |
|
|
| T |
40482668 |
tt |
40482667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 21611713 - 21611865
Alignment:
| Q |
11 |
gaagtttgcattgatattggaaaaactcttgaagttattctcacagttgttagatcatttggagatttgttttacatagttcagatttgtatgaagtttc |
110 |
Q |
| |
|
||||| |||||||||||||||| | | |||||||| | |||| | || |||||||| ||| || | |||||| | |||| |||| |||| ||||| |
|
|
| T |
21611713 |
gaagtgtgcattgatattggaatagcagttgaagttttcctcataattattagatcaattgcggacgtcttttacgtcattcacattttcatgaggtttc |
21611812 |
T |
|
| Q |
111 |
gtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
163 |
Q |
| |
|
||| || |||||||| |||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
21611813 |
atacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
21611865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University