View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_42 (Length: 231)
Name: NF12881_low_42
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 216
Target Start/End: Original strand, 49107473 - 49107672
Alignment:
| Q |
16 |
cagagagggtactcgtaggaactttgttggtcatttaaaactttgtttaagtttcttctttacaagaaaggaaaaaggcaatactaatatatatttagga |
115 |
Q |
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| T |
49107473 |
cagagagggtactcgtaggaactttgttggtcatttaaaactttgtttcagtt-cttctttacaagaaaggaaaaaggcaatactaatatatatttagga |
49107571 |
T |
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| Q |
116 |
acagatttaacttaaatgctccatcttgtatctgttgcttactttctgtgactagttatcacagtcacaaaatagattttatgcaaaattaatgttgcta |
215 |
Q |
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| T |
49107572 |
acagatttaacttaaatgctccatcttgtatctgttgcttactttctgtgactagttatcacagtcacaaaatagattttatgcaaaattaatgttgcta |
49107671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 50078048 - 50078090
Alignment:
| Q |
175 |
cacagtcaca-aaatagattttatgcaaaattaatgttgctag |
216 |
Q |
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| T |
50078048 |
cacagtcacagaaataaattttatgcaaaattaatgttgctag |
50078090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 40053647 - 40053577
Alignment:
| Q |
48 |
atttaaaactttgtttaagtttcttctttacaagaaaggaaaaaggcaatactaatatatatttaggaaca |
118 |
Q |
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| T |
40053647 |
atttgaaactttgtttcacttacttctttataagaaagaaaaaaggcaatactaatgtatacttaggaaca |
40053577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 216
Target Start/End: Original strand, 10796458 - 10796500
Alignment:
| Q |
175 |
cacagtcaca-aaatagattttatgcaaaattaatgttgctag |
216 |
Q |
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| T |
10796458 |
cacagtcacagaaataaattttatgcaaaattaatgttgctag |
10796500 |
T |
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