View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12881_low_43 (Length: 223)

Name: NF12881_low_43
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12881_low_43
NF12881_low_43
[»] chr1 (9 HSPs)
chr1 (1-223)||(30366769-30366991)
chr1 (1-223)||(30364933-30365151)
chr1 (1-151)||(13066923-13067072)
chr1 (91-222)||(13205766-13205896)
chr1 (91-223)||(13162830-13162963)
chr1 (91-218)||(13136341-13136469)
chr1 (102-223)||(13102456-13102578)
chr1 (100-223)||(13131137-13131261)
chr1 (87-223)||(13008494-13008633)
[»] chr6 (2 HSPs)
chr6 (109-223)||(31376804-31376917)
chr6 (86-205)||(31385048-31385166)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30366769 - 30366991
Alignment:
Q  1 tcaattaagtttgcatctgtgtttatacattttaagaaatatagtcagcctggaaaagtgcaacacttaatggggtgaaattgtaaattctcttcatgaa 100  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30366769 tcaattaagttcgcatctgtgtttatacattttaagaaagatagtcagcctggaaaagtgcaacacttaatggggtgaaatggtaaattctcttcatgaa 30366868  T
Q  101 ctaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30366869 ctaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtgta 30366968  T
Q  201 tgattcaatgtattggaggattt 223  Q
    |||||||||||||||||||||||    
T  30366969 tgattcaatgtattggaggattt 30366991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30364933 - 30365151
Alignment:
Q  1 tcaattaagtttgcatctgtgtttatacattttaagaaatatagtcagcctggaaaagtgcaacacttaatggggtgaaattgtaaattctcttcatgaa 100  Q
    |||||||||||||||| |||||||||||||| |||||| |||||| ||| |   |||| ||||||||| | || ||||||| || |||||||  |||| |    
T  30364933 tcaattaagtttgcatttgtgtttatacattctaagaa-tatagtaagcgtcagaaagggcaacacttcaaggtgtgaaatggttaattctc--catgca 30365029  T
Q  101 ctaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtgta 200  Q
    |||||| ||||||||||||||| | |||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||| ||||||||||||||| |    
T  30365030 ctaaagactataaaagtgtaaa-gtatgtacacattttataagcatacattaaaaacacatgcaattcgaaacatacctaaattaaatctacaatgtgca 30365128  T
Q  201 tgattcaatgtattggaggattt 223  Q
    |||||||||||||||||| ||||    
T  30365129 tgattcaatgtattggagaattt 30365151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 13066923 - 13067072
Alignment:
Q  1 tcaattaagtttgcatctgtgtttatacattttaagaaatatagtcagcctggaaaagtgcaacacttaatggggtgaaattgtaaattctcttcatgaa 100  Q
    |||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||| |||||||| | || |||||||  | ||||||||||||| |    
T  13066923 tcaattaagtttgcatttgtgtttatacattctaagaaatatagtaagcgtgggaaagtacaacacttcaaggcgtgaaatgattaattctcttcatgca 13067022  T
Q  101 ctaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatc 151  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||||||    
T  13067023 ctaaaggatataaaattgt-aaagcatgtacacattttataagcatacatc 13067072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 91 - 222
Target Start/End: Complemental strand, 13205896 - 13205766
Alignment:
Q  91 tcttcatgaactaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttg-aaacacacctaaagtaaatc 189  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||| |||  ||||||||||||||||| ||||||| ||  ||||||||    
T  13205896 tcttcacgcactaaaggctatataagtgtaaa-gcatgtacacattttataagcatgcatgaaaaacacatgcaatttgaaaacaca-ctttagtaaatc 13205799  T
Q  190 tacaatgtgtatgattcaatgtattggaggatt 222  Q
    ||||||||  || ||||| ||||||||||||||    
T  13205798 tacaatgtcaataattcagtgtattggaggatt 13205766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 13162963 - 13162830
Alignment:
Q  91 tcttcatgaactaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttg-aaacacac-ctaaagtaaat 188  Q
    |||||| | ||||||||||||| ||||||||| |||||||||||||||| |||||| |||  ||||||||||||||||| |||||||| ||  |||||||    
T  13162963 tcttcacgcactaaaggctatataagtgtaaa-gcatgtacacattttaaaagcatgcatgaaaaacacatgcaatttgaaaacacacactttagtaaat 13162865  T
Q  189 ctacaatgtgtatgattcaatgtattggaggattt 223  Q
    ||| |||||  || ||||| |||||||||||||||    
T  13162864 ctataatgtcaataattcagtgtattggaggattt 13162830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 13136341 - 13136469
Alignment:
Q  91 tcttcatgaactaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttg-aaacacac-ctaaagtaaat 188  Q
    |||||| | ||||||||||||| ||||||||| ||||||||||||||||||||||| |||  ||||||||| ||||||| |||||||| ||  |||||||    
T  13136341 tcttcacgcactaaaggctatataagtgtaaa-gcatgtacacattttataagcatgcatgaaaaacacattcaatttgaaaacacacactttagtaaat 13136439  T
Q  189 ctacaatgtgtatgattcaatgtattggag 218  Q
    |||||||||  || ||||| ||| ||||||    
T  13136440 ctacaatgtcaataattcagtgtcttggag 13136469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 223
Target Start/End: Complemental strand, 13102578 - 13102456
Alignment:
Q  102 taaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaattt-gaaacaca-cctaaagtaaatctacaatgtgt 199  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||| |||  || |||||||||||||  ||||| | |||  ||||||||| |||||| |    
T  13102578 taaaggctatataagtgtaaa-gcatgtacacattttataagcatgcatgaaagacacatgcaatttataaacataccctttagtaaatcttcaatgtct 13102480  T
Q  200 atgattcaatgtattggaggattt 223  Q
    || ||||| |||||||||||||||    
T  13102479 ataattcagtgtattggaggattt 13102456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 223
Target Start/End: Complemental strand, 13131261 - 13131137
Alignment:
Q  100 actaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttg-aaacacac-ctaaagtaaatctacaatgt 197  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||| |||  || |||||||||||||| ||||| || ||  |||||| |||||||||    
T  13131261 actaaaggctatataagtgtaaac-catgtacacattttataagcatgcatgaaagacacatgcaatttgcaaacatacactttagtaaaactacaatgt 13131163  T
Q  198 gtatgattcaatgtattggaggattt 223  Q
      || ||||| |||||||||||||||    
T  13131162 caataattcagtgtattggaggattt 13131137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 13008633 - 13008494
Alignment:
Q  87 attctcttcatgaactaaaggctataaaagtgtaaaagcat--gtacacattttataagcatacatctaaaacacatgcaatttgaaa-cacac-ctaaa 182  Q
    |||||| | ||| ||||||||||||| ||||||||| ||||  ||||||| |||||| |||| |||| || ||||||||||||||||| ||||  ||  |    
T  13008633 attctcataatgcactaaaggctatataagtgtaaa-gcatatgtacacaatttatatgcatgcatcaaagacacatgcaatttgaaaacacatacttta 13008535  T
Q  183 gtaaatctacaatgtgtatgattcaatgtattggaggattt 223  Q
    |||||||||||||||  || ||||| |||||||||||||||    
T  13008534 gtaaatctacaatgtccataattcagtgtattggaggattt 13008494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 31376917 - 31376804
Alignment:
Q  109 tataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagtaaatctacaatgtgtatgattcaa 208  Q
    |||||||||||||| |||| ||||||||| ||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  31376917 tataaaagtgtaaa-gcatttacacatttcataagcataaatttaaaacacatgcaatttgaaacatacctaaagtaaatctacaatgtttatgattcaa 31376819  T
Q  209 tgtattggaggattt 223  Q
    |||||||||||||||    
T  31376818 tgtattggaggattt 31376804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 31385048 - 31385166
Alignment:
Q  86 aattctcttcatgaactaaaggctataaaagtgtaaaagcatgtacacattttataagcatacatctaaaacacatgcaatttgaaacacacctaaagta 185  Q
    ||||||||||||| ||||||| |||||||||| |||| ||||||||| |||||||||||||||||| || | ||||||||||  ||||| ||||||||||    
T  31385048 aattctcttcatgcactaaagactataaaagtataaa-gcatgtacatattttataagcatacatcaaacaaacatgcaattcaaaacatacctaaagta 31385146  T
Q  186 aatctacaatgtgtatgatt 205  Q
    || ||||||| || ||||||    
T  31385147 aacctacaatatgcatgatt 31385166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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