View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12881_low_5 (Length: 646)
Name: NF12881_low_5
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 569; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 14 - 643
Target Start/End: Original strand, 40093199 - 40093828
Alignment:
| Q |
14 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093199 |
tggacttcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaacatgaacc |
40093298 |
T |
|
| Q |
114 |
atatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
213 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093299 |
atatacacatcagaactatggagctttttttgacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactctt |
40093398 |
T |
|
| Q |
214 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgata |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093399 |
gatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgata |
40093498 |
T |
|
| Q |
314 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093499 |
caggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggt |
40093598 |
T |
|
| Q |
414 |
acaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctacta |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40093599 |
acaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctacta |
40093698 |
T |
|
| Q |
514 |
accaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| |
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|
| T |
40093699 |
accaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgg |
40093798 |
T |
|
| Q |
614 |
gtaaatggcaaatgcatagggagatactgg |
643 |
Q |
| |
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|||||||| || |||| ||| |||||||| |
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|
| T |
40093799 |
gtaaatggacaaagcattgggcgatactgg |
40093828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 14 - 643
Target Start/End: Original strand, 40062542 - 40063197
Alignment:
| Q |
14 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcatagaattgcttgctcccccaatgatttctctcattactatatctaa-----cat |
108 |
Q |
| |
|
||||| |||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
40062542 |
tggacttcaggttcagattttcgtgtttgtagtttccaattatgcatagaatggcttgctcctccaaagatttctctcattactatatctaagctaacat |
40062641 |
T |
|
| Q |
109 |
gaaccatatacacatcagaactatggagcnnnnnnngacacatggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaaga |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| | |
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|
| T |
40062642 |
gaaccatatgcacatcagaactatggagctttttttgacagatggggagcggggatcaccggtccagtaacattgaaaggtttgaagaatggcaacaaca |
40062741 |
T |
|
| Q |
209 |
ctcttgatctctcctctcggaagtggacatatcaggtcagtcttcacttttgatcgaagact------------atttattagtcttac---------at |
287 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||| || |
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|
| T |
40062742 |
ctcttgatctctcctctcagaagtggacatatcaggtcagtcttaacttttgatcaaagacttgatcaaagactatttattagtcttaatggagattgat |
40062841 |
T |
|
| Q |
288 |
agttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactacttt |
387 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||| || ||||||| |
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|
| T |
40062842 |
tgttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctacttt |
40062941 |
T |
|
| Q |
388 |
ccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccac |
487 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40062942 |
ccctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccac |
40063041 |
T |
|
| Q |
488 |
tatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttca |
587 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40063042 |
tatatgaaaaatgttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttca |
40063141 |
T |
|
| Q |
588 |
cggggatgggaaaaggcgaggattgggtaaatggcaaatgcatagggagatactgg |
643 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| || |||| ||| |||||||| |
|
|
| T |
40063142 |
cggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactgg |
40063197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 56 - 643
Target Start/End: Original strand, 40080933 - 40081548
Alignment:
| Q |
56 |
tgcatagaattgcttgctcccccaatgatttctctcattactatatctaac-----atgaaccatatacacatcagaactatggagcnnnnnnngacaca |
150 |
Q |
| |
|
|||||||| | ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40080933 |
tgcatagactggcttgctccttcagtgatttctctcattactatatctaagctaatatgaaccatatacacatcagaactatggagccttttttgacaca |
40081032 |
T |
|
| Q |
151 |
tggggagcggggatcaccggtccagtgatattgaaaggtttgaagaatggcaacaagactcttgatctctcctctcggaagtggacatatcaggtcagtc |
250 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
40081033 |
gtgggagcagggatcaccggtcccgtgatattgaaaggtttgaagaatggcaacaacactcttgatctctcctctcggaagtggacatatcaggtcaatc |
40081132 |
T |
|
| Q |
251 |
ttcactttt-gatcgaagactatttattagtctt---------------------acatagttaatggagttaattcttttgatacaggttggcctaaaa |
328 |
Q |
| |
|
|| | |||| ||||||| ||||||||||| |||| |||| |||||||||||||||| ||| ||||||| ||||||||||| |
|
|
| T |
40081133 |
ttaaatttttgatcgaaaactatttattattctttctttatcactttaatggaatacattgttaatggagttaattttttcgatacagattggcctaaaa |
40081232 |
T |
|
| Q |
329 |
ggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaat |
428 |
Q |
| |
|
|| |||||||||||||| |||||||||||||| |||| |||||||||| || |||||| ||||||||| ||||||||| |||||||||||||| ||| || |
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|
| T |
40081233 |
ggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtctacttaccctaagaaccaaccattggtttggtacaaggtagttttat |
40081332 |
T |
|
| Q |
429 |
tttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatg-ttttttgctactaaccaatgtcatgca |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| || || |
|
|
| T |
40081333 |
tttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaatgccactatatgaaaaatgtttttttgctactaaccaatgtaataca |
40081432 |
T |
|
| Q |
528 |
tgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggtaaatggcaaatg |
627 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| || | |
|
|
| T |
40081433 |
tgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggtgaggcttgggtaaatggacaaag |
40081532 |
T |
|
| Q |
628 |
catagggagatactgg |
643 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
40081533 |
cattgggcgatactgg |
40081548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 40080866 - 40080912
Alignment:
| Q |
14 |
tggacatcaggttcagcttttcttgtttttagtttccaattatgcat |
60 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
40080866 |
tggacttcaggttcagcttttcttgtttttagtttctaaatatgcat |
40080912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 536 - 615
Target Start/End: Complemental strand, 22012756 - 22012677
Alignment:
| Q |
536 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggattgggt |
615 |
Q |
| |
|
||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggt |
22012677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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