View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12881_low_6 (Length: 632)
Name: NF12881_low_6
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 9e-84; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 27388677 - 27388493
Alignment:
| Q |
18 |
attccaagatacttttcagcatcctc--tgtatgcatccatccatgattttacaaatgagatatgtgtatcaacaatttgtagtgaaacccttcaaacaa |
115 |
Q |
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||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27388677 |
attccaagatacttttcagtatcctcaatgtgtgcatccatccatgattttacaaatgagatatgtgtatcagcaatttgtagtgaaacccttcaaacaa |
27388578 |
T |
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| Q |
116 |
gataattgacttagttataagcgactgtactattcatgtcaaaatgtttgcattttagtaaagaacaaaacacattattaagtag |
200 |
Q |
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| T |
27388577 |
gataattgacttagttataagcgactgtactattcatgtcaaaaagtttgcattttagtaaagaacaaaacacattattaagtag |
27388493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 391 - 514
Target Start/End: Complemental strand, 27388302 - 27388179
Alignment:
| Q |
391 |
gaaagtgactattaatcaattacatattttgataataacaaaccaattttataaaatcaattctttcaaaacttattttcatcgtcacaaatatacaccg |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27388302 |
gaaagtgactattaatcaattacatattttgataataaaaaaccaattttataaaatcaattctttcaaaacttattttcatcgtcacaaatatacaccg |
27388203 |
T |
|
| Q |
491 |
aattatgttgaatatattaactat |
514 |
Q |
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|||||||||||||||||||||||| |
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| T |
27388202 |
aattatgttgaatatattaactat |
27388179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 27518627 - 27518811
Alignment:
| Q |
18 |
attccaagatacttttcagcatcctc--tgtatgcatccatccatgattttacaaatgagatatgtgtatcaacaatttgtagtgaaacccttcaaacaa |
115 |
Q |
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| T |
27518627 |
attccaagatacttttcagcatcctcaatgtgtgcatccatccatgattttacaaatgggatatgtgtatcagcaatttgttgtgaaacccttcaaacaa |
27518726 |
T |
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| Q |
116 |
gataattgacttagttataagcgactgtactattcatgtcaaaatgtttgcattttagtaaagaacaaaacacattattaagtag |
200 |
Q |
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||||||||||||||||| || | ||||||||||||||||||| | ||||||| | |||| ||| |||||||||||||||||| |
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| T |
27518727 |
gataattgacttagttagaaactgttgtactattcatgtcaaaagatgtgcatttaaataaaaaaccaaacacattattaagtag |
27518811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 27497145 - 27497329
Alignment:
| Q |
18 |
attccaagatacttttcagcatcctct--gtatgcatccatccatgattttacaaatgagatatgtgtatcaacaatttgtagtgaaacccttcaaacaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
27497145 |
attccaagatacttttcagcatcctctatgtgtgcatccatccatgattttacaaatgagatatgtgtatcagcaatttgtggtgaaacccttcaaacaa |
27497244 |
T |
|
| Q |
116 |
gataattgacttagttataagcgactgtactattcatgtcaaaatgtttgcattttagtaaagaacaaaacacattattaagtag |
200 |
Q |
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||| | |||||||||||||| || | |||||||||||| ||| || ||||||| | |||||||| || ||| |||||| |||| |
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| T |
27497245 |
gatgactgacttagttataaacggttatactattcatgttcaaaggtgtgcatttaaataaagaaccaaccacgttattatgtag |
27497329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 507 - 619
Target Start/End: Complemental strand, 27387164 - 27387052
Alignment:
| Q |
507 |
ttaactattaagtagtggaaattttgttgccgctatgtaatttggttgtgctttacttttgacatcaacatggcaccggagttaagatcctctccattta |
606 |
Q |
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|||||||||||||||||||||||||| |||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27387164 |
ttaactattaagtagtggaaattttgctgccgccatctaatttggttgtactttacttttgacatcaacatggcaccggagttaagatcctctccattta |
27387065 |
T |
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| Q |
607 |
atctcttcttcat |
619 |
Q |
| |
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||||||||||||| |
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| T |
27387064 |
atctcttcttcat |
27387052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 479 - 584
Target Start/End: Complemental strand, 27329806 - 27329703
Alignment:
| Q |
479 |
aaatatacaccgaattatgttgaatatattaactattaagtagtggaaattttgttgccgctatgtaatttggttgtgctttacttttgacatcaacatg |
578 |
Q |
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|||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |
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| T |
27329806 |
aaatatacaccgaattgtattgaatatattt--tattaagtagtggaaattttgttgccgctatctaatttgattgtatcttacttttgacatcaacatg |
27329709 |
T |
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| Q |
579 |
gcaccg |
584 |
Q |
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|||||| |
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| T |
27329708 |
gcaccg |
27329703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 27330042 - 27329991
Alignment:
| Q |
430 |
aaaccaattttataaaatcaattctttcaaaacttattttcatcgtcacaaa |
481 |
Q |
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| T |
27330042 |
aaaccaattttataaaatcaattctttcaaaacttattttcatcatcacaaa |
27329991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 613
Target Start/End: Complemental strand, 28229545 - 28229517
Alignment:
| Q |
585 |
gagttaagatcctctccatttaatctctt |
613 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28229545 |
gagttaagatcctctccatttaatctctt |
28229517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 585 - 613
Target Start/End: Original strand, 39305372 - 39305400
Alignment:
| Q |
585 |
gagttaagatcctctccatttaatctctt |
613 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
39305372 |
gagttaagatcctctccatttaatctctt |
39305400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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