View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12881_low_9 (Length: 583)
Name: NF12881_low_9
Description: NF12881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12881_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 495; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 40094316 - 40093770
Alignment:
| Q |
18 |
agtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094316 |
agtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctac |
40094217 |
T |
|
| Q |
118 |
ttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40094216 |
ttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctatctgttttgtagcaaaa |
40094117 |
T |
|
| Q |
218 |
gatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatctgtgagatggga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40094116 |
gatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccatttggtttcaaaaacgactgtggcacgtggtatctgtgagatgaga |
40094017 |
T |
|
| Q |
318 |
ttaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttc |
417 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40094016 |
ttaatgtctcaatcacatcatagatcaagattttttttctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttc |
40093917 |
T |
|
| Q |
418 |
cacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgccc |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40093916 |
cacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtaggccagtatcgccc |
40093817 |
T |
|
| Q |
518 |
aatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40093816 |
aatgctttgtccatttacccaagcctcgccttttcccatccctgtga |
40093770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 40063684 - 40063139
Alignment:
| Q |
18 |
agtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctac |
117 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063684 |
agtttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaaaagattacctgattatgattaggacagttgagcaacagtgcaggccctac |
40063585 |
T |
|
| Q |
118 |
ttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaa |
217 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
40063584 |
ttttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacaaactttctagctgttttgtagcaaaa |
40063485 |
T |
|
| Q |
218 |
gatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatctgtgagatggga |
317 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||| ||||||||| |
|
|
| T |
40063484 |
gctatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatggga |
40063385 |
T |
|
| Q |
318 |
ttaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttc |
417 |
Q |
| |
|
|||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063384 |
ttaatgtctcagtcacatcgtagatcaagatttttttt-tcatgtttaaactctttttcattgaaaatttgcaacacttacaatgtctgtgatggttttc |
40063286 |
T |
|
| Q |
418 |
cacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgccc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40063285 |
cacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgccc |
40063186 |
T |
|
| Q |
518 |
aatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
564 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40063185 |
aatgctttgtccatttacccaagcctcaccttttcccatccccgtga |
40063139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 564
Target Start/End: Complemental strand, 40082034 - 40081490
Alignment:
| Q |
18 |
agtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgcaggccctac |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
40082034 |
agtttccacacgtccctaaaggtgttccatagcttgcaaatttgatggatgaaattacctgattatgattaggacaactgagcaacagagcaggccctac |
40081935 |
T |
|
| Q |
118 |
ttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| |
|
|
| T |
40081934 |
ttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgaacacacactttccagctgttttgtagcaaaa |
40081835 |
T |
|
| Q |
218 |
gatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccgtttggtttcaaaaacgactgtggcacgtggtatctgtgagatggga |
317 |
Q |
| |
|
|||||||| || |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||| ||||| || |
|
|
| T |
40081834 |
gatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcaagatgcga |
40081735 |
T |
|
| Q |
318 |
ttaatgtcgcagtcacatcatagatcaagannnnnnnnctcatgtttaaactcttcttcattgaaaatttgcaacacttacaatgtctgtgatggttttc |
417 |
Q |
| |
|
||| |||| |||| |||||||||||||||| | |||||||||| || || ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40081734 |
ttattgtctcagtaacatcatagatcaagattattttctt--tgtttaaacttttttttattgaaaatttgcaacacttacaatgtctgtgacggttttc |
40081637 |
T |
|
| Q |
418 |
cacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgccc |
517 |
Q |
| |
|
|||| ||| || ||||||| | | |||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40081636 |
cacagttcttgcgacatttagatgaagtataaggtcctctatagttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggccagtatcgccc |
40081537 |
T |
|
| Q |
518 |
aatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
564 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40081536 |
aatgctttgtccatttacccaagcctcaccttttcccatccccgtga |
40081490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 395 - 564
Target Start/End: Original strand, 22012538 - 22012707
Alignment:
| Q |
395 |
ttacaatgtctgtgatggttttccacaattcatgtgacatttggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagca |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||||||| | || | | | |||||| || ||||||||||| || || | | ||| | || |
|
|
| T |
22012538 |
ttacaatgtctgtgatggttttccacaattcttgaggcatttggatgcagaatatgttcctctataattgcatgagtcagtacagccagaattcggagag |
22012637 |
T |
|
| Q |
495 |
acatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtga |
564 |
Q |
| |
|
| ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
22012638 |
atgtatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtga |
22012707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 164 - 267
Target Start/End: Original strand, 22012288 - 22012391
Alignment:
| Q |
164 |
gggtgagaatcagatacatgggcacacacacttcctagctgttttgtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagag |
263 |
Q |
| |
|
|||||||| |||| |||||| | |||||||||| ||| |||||||||| |||||||||||| ||| || || || || ||||||||||||||||||| || |
|
|
| T |
22012288 |
gggtgagattcagttacatgtgaacacacactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaag |
22012387 |
T |
|
| Q |
264 |
tgtt |
267 |
Q |
| |
|
|||| |
|
|
| T |
22012388 |
tgtt |
22012391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 556
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
516 |
ccaatgctttgtccatttacccaagcctcgccttttcccat |
556 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University