View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_15 (Length: 522)
Name: NF12882_high_15
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 456
Target Start/End: Original strand, 32444004 - 32444456
Alignment:
| Q |
14 |
cagagataaacatttttggtatgaacagagtcaaaaacgagttttgacatgatcgagtctccaaatgtggcgtatgcagagatgagcctggtgatgagga |
113 |
Q |
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| T |
32444004 |
cagagataaacatttttggtatgaacagagtcaaagacgagttttgacatgatcgagtctccaaatgtggcgtatgcagagatgagcctggtggtgagga |
32444103 |
T |
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| Q |
114 |
aagcgttttgggaaaagaaatttgtgaggatttgagagtgacattgttgggtgagtttgagagcgtgaaggtcgatgctgagctgaagaagatgaaggag |
213 |
Q |
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| T |
32444104 |
aagcgttttgggaaaagcaatttgtgaggatttgagagtgacattgttgggtgagtttgagagagtgaaggtcgatgctgagctgaagaagatgaaggag |
32444203 |
T |
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| Q |
214 |
attgtgtggtgaaagggatacagtggcggaggtgtgataacgataacgagaggttatgcatgaaaatgttctcgtcagaaacataagagctatcgatggt |
313 |
Q |
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| T |
32444204 |
attgtgtggtgaaagggatacaatggcggaggtgtgataacgataacgagaggttgtgcgtgaaaatgttctcgtcagaaacataagagctatcgatggt |
32444303 |
T |
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| Q |
314 |
tgatctcaaattattagtacacaaaattcagataaattactacgtgaaaaaaccaaaatgatattgctcttgaagttcctatat---ttctgtgt----a |
406 |
Q |
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| T |
32444304 |
tgatctcaaattattagtacacaaaattcaaataaattactacgtgaaaaaaccaaaatgatattgctcttgaagttcctatttttcttctgtgtagtca |
32444403 |
T |
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| Q |
407 |
gtcacaacttgttt---gcacccaataaactttaaaaagacgtaacttatttt |
456 |
Q |
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| T |
32444404 |
gtcacaacttgtttgtagcacccaataaactttaaaaagacgtaacttatttt |
32444456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 469 - 522
Target Start/End: Original strand, 32444453 - 32444504
Alignment:
| Q |
469 |
ttttagtgtcttgatgcttgtaataagtttttcactgattttcttccaacaatt |
522 |
Q |
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| T |
32444453 |
ttttagtgtcttgatgcttgtaataag--tttcactgattctcttccaacaatt |
32444504 |
T |
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