View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12882_high_16 (Length: 508)
Name: NF12882_high_16
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_16 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Complemental strand, 41941572 - 41941100
Alignment:
| Q |
15 |
cagagaccctgactgaaaatgtttcatataggaactgtttgtagttgttctgaaaaggcaaaagaataccatttgagtgaaacaccaaaagcagcagcat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41941572 |
cagagaccctgactgaaaatgtttcatataggaactgtttgtagttgttctgaaaaggcaaaagaataccatttgagtgaaacaccaaaagcagcagcat |
41941473 |
T |
|
| Q |
115 |
gtatcagtggtccatctttactctcactgacactaacacttcatctaagcgttacaagtgcttgtctaaactcagaatcatattccagacagttaaatct |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41941472 |
gtatcagtggtccatctttactctcactgacactaacacttcatctaagcgttacaagtgcttgtctaaactcagaatcatattccagacagtaaaatct |
41941373 |
T |
|
| Q |
215 |
ctctcattctatgcacacatacacatgcactatcactctccatattgcgacctagcaaatgcatactcttatctgtcgctgaatacacttcacgcacgag |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41941372 |
ctctcattctatgcacacatacacatgcactatcactctccatattgcgacctagcaaatgcatactcttatctgtcgctgaatacacttcacgcacgag |
41941273 |
T |
|
| Q |
315 |
ccataactaatgttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaagataataatgaacacagttcggccaatttgtgactaac |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||| | | |
|
|
| T |
41941272 |
ccataactaatgttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaaga---taatgaacacagttcagccaatctgtgacgacc |
41941176 |
T |
|
| Q |
415 |
tctgcgacaatagagtagctatagctctgtttatgttgcgtgatgaattagggtttcaatgttacaagtaatatat |
490 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41941175 |
tctgcgacaatagagtagctatagttctatttatgttatgtgatgaattagggtttcaatgttacaagtaatatat |
41941100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 7441007 - 7440955
Alignment:
| Q |
324 |
atgttaaaacaacgactagtaacagaagattaaataagagaacaaaaataaaa |
376 |
Q |
| |
|
|||||| |||||| ||||||||| |||||||||||||||||| ||| ||||| |
|
|
| T |
7441007 |
atgttagaacaacatctagtaacataagattaaataagagaacgaaagtaaaa |
7440955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 24568 - 24532
Alignment:
| Q |
342 |
gtaacagaagattaaataagagaacaaaaataaaaga |
378 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24568 |
gtaacagaagattaaataagagaacaaaagtaaaaga |
24532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University