View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12882_high_18 (Length: 493)
Name: NF12882_high_18
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Original strand, 26968444 - 26968919
Alignment:
| Q |
18 |
gttaatgcaggtcctcgtcattggatttttaattaaacattgatctatactttaatcgaaaatccaaagacatcttttatttttgtagatgtttcataca |
117 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26968444 |
gttaatgcatgttctcgtcattggatttttaattaaacata-atctatacttcaatcttaaatccaaagacatcttttatttttgtagatgtttcataca |
26968542 |
T |
|
| Q |
118 |
gtccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatttaaacttaacaaaacaaccaaaaggtaaacaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
26968543 |
atccatataaaaaacactagatacatatatgaagagaaaagtaaaccaaatagtattgtttccatataaacttaacaaagcaaccaaaaggtaaacaaac |
26968642 |
T |
|
| Q |
218 |
aagtttcatgattcatcacatcatgaatataact---------acaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26968643 |
aagtttcatgattcatcacatcatgaatataacttgatgtactacaaatcacttctttttaatatcaaggagtccaacacgagtaaccccttcatcatcc |
26968742 |
T |
|
| Q |
309 |
aaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26968743 |
aaaggtcccacatcattgaatgtctgaccggtcatctgatccgccgctttcagcctctccgccaccgctcctgttcgagtatcctccgttctgatcaccc |
26968842 |
T |
|
| Q |
409 |
cctcatttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctctctgct |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26968843 |
cctcatttccacgcctccaagtttcctctccaaatcctttacgtccataatttccactttccattttcctccctgct |
26968919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University