View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12882_high_19 (Length: 486)
Name: NF12882_high_19
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_19 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 51023163 - 51022685
Alignment:
| Q |
1 |
taccattcttgcgaacctcagtgagacgagcaccaagcttggttgaaagaacatggctcaaaggcatcaactcaggagtctcatcggtggcatatccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51023163 |
taccattcttgcgaacctcagtgagacgagcaccaagcttggttgcaagaacatggctcaaaggcatcaactcaggagtctcatcggtggcatatccaaa |
51023064 |
T |
|
| Q |
101 |
catgtgaccctgatcaccagcaccaatctcctcgggtctttttgtaagatgaccatgtacaccctgagcaatatcaggactctgctgctcaatgttgacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51023063 |
catgtgaccctgatcaccagcaccaatctcctcaggtctttttgtaagatgaccatgtacaccctgagcaatatcaggactctgctgctcaatgttgacg |
51022964 |
T |
|
| Q |
201 |
agaaccttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagcct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51022963 |
agaaccttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagcct |
51022864 |
T |
|
| Q |
301 |
tggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51022863 |
tggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcac |
51022764 |
T |
|
| Q |
401 |
agcatcagagatttgatcacaaagcttgtcagggtgtccctcattcacggactcagaggtaaataggaaggtctctgct |
479 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51022763 |
agcatcagagatttgatcacagagcttgtcagggtgtccctcattcacggactcagaggtaaataggaaggtctctgct |
51022685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 457
Target Start/End: Original strand, 20525768 - 20526219
Alignment:
| Q |
6 |
ttcttgcgaacctcagtgagacgagcaccaagcttggttgaaagaacatggctcaaaggcatcaactcaggagtctcatcggtggcatatccaaacatgt |
105 |
Q |
| |
|
||||||||||| |||||||| ||| || | |||||||| |||||||||| | |||||||| | ||| || || |||||||| ||||| || ||||||| |
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|
| T |
20525768 |
ttcttgcgaacttcagtgagcttagctcctaacttggttgcaagaacatgggttaaaggcataagctcgggtgtttcatcggtagcatacccgaacatgt |
20525867 |
T |
|
| Q |
106 |
gaccctgatcaccagcaccaatctcctcgggtctttttgtaagatgaccatgtacaccctgagcaatatcaggactctgctgctcaatgttgacgagaac |
205 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || ||||||||||| || || |
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|
| T |
20525868 |
gaccttgatcaccagcaccaatttcctcaggtctttttgtaagatggccatgaacaccttgagcaatatcaggactctgttgttcaatgttgacaaggac |
20525967 |
T |
|
| Q |
206 |
cttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagccttggtt |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || || || ||||| || | ||| ||||| || || |||||||| || || || ||| |
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|
| T |
20525968 |
tttgcagttgtcagcatcaagaccaacatcatctgaaacaaaacctatgttcctgcatgttttacggacaatcttttcgtagtcaacatttgcttttgtt |
20526067 |
T |
|
| Q |
306 |
gtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcacagcat |
405 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||| ||||||||| || || || |||||||||||||| || |||| |
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|
| T |
20526068 |
gtgatctcaccaaagaccataaccatgttggtctttgtgcaagtttcacatgcaactttgctgtctggatcttgctcgaggcaagcatctagaacggcat |
20526167 |
T |
|
| Q |
406 |
cagagatttgatcacaaagcttgtcagggtgtccctcattcacggactcaga |
457 |
Q |
| |
|
||||||| || || ||||||||||| ||||||||||| ||||| || ||||| |
|
|
| T |
20526168 |
cagagatctggtcgcaaagcttgtcggggtgtccctcgttcacagattcaga |
20526219 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 168; Significance: 8e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 45208159 - 45207688
Alignment:
| Q |
1 |
taccattcttgcgaacctcagtgagacgagcaccaagcttggttgaaagaacatggctcaaaggcatcaactcaggagtctcatcggtggcatatccaaa |
100 |
Q |
| |
|
|||||||||| | |||||| || ||||||| |||||| ||||||| ||| |||||| ||||||||||||| ||||| || ||||| || ||||| ||||| |
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|
| T |
45208159 |
taccattcttcctaacctcggtaagacgagaaccaagtttggttgcaaggacatgggtcaaaggcatcaattcaggggtttcatcagtagcatagccaaa |
45208060 |
T |
|
| Q |
101 |
catgtgaccctgatcaccagcaccaatctcctcgggtctttttgtaagatgaccatgtacaccctgagcaatatcaggactctgctgctcaatgttgacg |
200 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||| || | || || | || || || |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45208059 |
catgtgaccctggtcaccagcaccaacctcctccgggcgcttggtgaagtgtccgtgaacaccctgagcaatatcaggactctgctgctcaatgttaacc |
45207960 |
T |
|
| Q |
201 |
agaaccttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcacgcacaattttctcatagtcaaccttagcct |
300 |
Q |
| |
|
| |||||||| ||||| ||||||||||| ||||||||||| | || ||||| | | ||| |||||||| || || ||||||||||| || || |||| |
|
|
| T |
45207959 |
aagaccttgcatttgtcggcatcaagaccaacatcatcagagatgaatccaatggtgcggcatgtgtcacgaacgatcttctcatagtctacattggcct |
45207860 |
T |
|
| Q |
301 |
tggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgctgtctacgtcctgttcaaggcaagcatctagcac |
400 |
Q |
| |
|
||||||| || || ||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||| || ||||| ||||| |
|
|
| T |
45207859 |
tggttgttatttctccaaagaccatgaccatgttagtcttggtgcaagtctcacaggcaaccttgctgtcaggatcctgttcaagacaggcatcgagcac |
45207760 |
T |
|
| Q |
401 |
agcatcagagatttgatcacaaagcttgtcagggtgtccctcattcacggactcagaggtaaataggaaggt |
472 |
Q |
| |
|
||||||||||| || || || |||||||| ||||| ||||| ||||| || ||||| |||||||| ||||| |
|
|
| T |
45207759 |
tgcatcagagatctggtcgcacagcttgtcggggtgaccctcgttcactgattcagatgtaaatagaaaggt |
45207688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 71 - 364
Target Start/End: Complemental strand, 41213189 - 41212896
Alignment:
| Q |
71 |
ctcaggagtctcatcggtggcatatccaaacatgtgaccctgatcaccagcaccaatctcctcgggtctttttgtaagatgaccatgtacaccctgagca |
170 |
Q |
| |
|
|||||| || ||||| |||||||| |||||||||||||| || |||||||||||||| ||||| ||| |||| || | |||||||| || || ||||| |
|
|
| T |
41213189 |
ctcaggtgtttcatctgtggcatagccaaacatgtgaccttggtcaccagcaccaatttcctctggttttttggtcaagtgaccatgaactccttgagcg |
41213090 |
T |
|
| Q |
171 |
atatcaggactctgctgctcaatgttgacgagaaccttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcac |
270 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| ||||| || |||||||||||||| |||||| | || || || ||||| |||||| ||||| | |
|
|
| T |
41213089 |
atatcaggactctgttgttcaatgttgacaagaactttgcaattatcagcatcaagaccaacatcagctgatacgaatccaattcctctgcaagtgtctc |
41212990 |
T |
|
| Q |
271 |
gcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaacctt |
364 |
Q |
| |
|
| || ||||||||||||| || ||||||||||||| |||||||||||||||||||||| ||||||||| || || || ||||| |||||||| |
|
|
| T |
41212989 |
gaactattttctcatagttcacggtagccttggttgttatctcaccaaagaccataaccatgttagtctttgtacatgtctcacatgcaacctt |
41212896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 72 - 367
Target Start/End: Original strand, 27718727 - 27719022
Alignment:
| Q |
72 |
tcaggagtctcatcggtggcatatccaaacatgtgaccctgatcaccagcaccaatctcctcgggtctttttg-taagatgaccatgtacaccctgagca |
170 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||||||| ||||||||||| ||||| ||||| || ||| ||| | | ||||| || || || |||||| |
|
|
| T |
27718727 |
tcaggtgtttcatcagtagcatagccaaacatgtgaccttgatcaccagctccaatttcctcagg-cttcttgctcaagtgaccgtgaactccttgagca |
27718825 |
T |
|
| Q |
171 |
atatcaggactctgctgctcaatgttgacgagaaccttgcagttgtcagcatcaagacctacatcatcagaaacaaacccaatctttctgcaggtgtcac |
270 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||| |||| ||||||||||| | ||||| ||||||| |
|
|
| T |
27718826 |
atatcagggctctgttgctcaatgttgacgagaacattgcatttgtcagcatcaagaccaacatcagcagacacaaacccaatactcctgcaagtgtcac |
27718925 |
T |
|
| Q |
271 |
gcacaattttctcatagtcaaccttagccttggttgtgatctcaccaaagaccataaccaagttagtcttggtgcaagtttcacaagcaaccttgct |
367 |
Q |
| |
|
| || |||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |||||| || || || || || || ||||||||||| |
|
|
| T |
27718926 |
gaactattttctcatagtccacctttgccttggttgtgatttcaccaaagaccataaccatgttagtttttgtacaggtctcgcaggcaaccttgct |
27719022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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