View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_2 (Length: 967)
Name: NF12882_high_2
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Complemental strand, 35273324 - 35272777
Alignment:
| Q |
17 |
aaatcaacaacttaaatagaggttgatttagttggtaagaagttcaaattgcataaccgttnnnnnnncggttacctgccattgggttaatgtaggaaag |
116 |
Q |
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| T |
35273324 |
aaatcaacaacttaaatagaggttggtttagttggtaagaagttcaacttgcataaccgttaaaaaaacggttaccggccattgggttaatgtaggaaag |
35273225 |
T |
|
| Q |
117 |
agatgggttgcgagacagagagagattggcagtggtatgtcgccatcaacggtggaggtctgacttgcgagctgatgcaaaggaagcaacctcactgcga |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273224 |
agatgggttgcgagacagagagagattggcagcggtatgtcgccatcaacggtggaggtctgacttgcgagctgatgcaaaggaagcaacctcactgcga |
35273125 |
T |
|
| Q |
217 |
cgctacggaccgtgtgcatggctgttatttgtgtgctgaggcagcctgtgccagcttaattggttttatcccggttcaaaggattggaccgcacaaatat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273124 |
cgctacggaccgtgtgcatggctgttatttgtgtgctgaggcagcctgtgccagcttaattggttttatcccggttcaaaggattggaccgcacaaatat |
35273025 |
T |
|
| Q |
317 |
ctggttcaaggttcaactgttttacctgtcagtctggcccggttcactaatcgatcacaaagtagaatataaaaatgaaaagattttcttattttgtttg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35273024 |
ctggttcaaggttcaactgttttacctgtcagtctggcccggttcactaatcgatcacaaagtagaatataaaaatgaaaagattttcttattttgtttg |
35272925 |
T |
|
| Q |
417 |
actctgcatactcacactattaactcgaccttagttcaacattttcatcatccattaatcttcttcttcatctaagtgcaatttccttcaacatgaacca |
516 |
Q |
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| T |
35272924 |
actctgcatactcacactattaactccaccttagttcaacattttcatcatccattaatcttcttcttcatctaagtgcaatttccttcaacatgaacca |
35272825 |
T |
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| Q |
517 |
gaaaaatcccaaagaagaactgtgagaaaaatcgctgcatgcatgcatg |
565 |
Q |
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| T |
35272824 |
gaaaaatcccaaagaagaactgtgagaaaaa-cgctgcatgcatgcatg |
35272777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 609 - 899
Target Start/End: Complemental strand, 35272733 - 35272444
Alignment:
| Q |
609 |
atcagtgtgtgcgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagc |
708 |
Q |
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| T |
35272733 |
atcagtgtgtgtgtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagc |
35272634 |
T |
|
| Q |
709 |
tcaagttaataatggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagta |
808 |
Q |
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| T |
35272633 |
tcaagttaataatggacaaactcttgctggtatgtatatatgtctgattttgctctttctttacccattaatcagttcttgatgtgcaatttcggtagta |
35272534 |
T |
|
| Q |
809 |
atgtcagttctaaaattattcatgtctgnnnnnnnnnnnnnnnnctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
899 |
Q |
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| T |
35272533 |
atgtcagttctaaaatcattcatgtctg-tttttttagttttttctttaatcatgtttcccaagaatggtttcttcattgatgccccttgc |
35272444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 621 - 716
Target Start/End: Complemental strand, 35254658 - 35254563
Alignment:
| Q |
621 |
gtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtta |
716 |
Q |
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| T |
35254658 |
gtgttctttgtagttttcaaaactttctgtatgattacctcaagaagaagggattgtcaaacactgctgagattttcaaaaatgaagctcatgtta |
35254563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 621 - 715
Target Start/End: Complemental strand, 35248160 - 35248066
Alignment:
| Q |
621 |
gtgttctgtgtagttttcaaatctttctgcatgattacctcaagaagaaaggattcttggaaactgcacagattttccaaaatgaagctcaagtt |
715 |
Q |
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||||||| ||||||||||||| ||||||| ||||||| |||||||||| ||||| | | ||||| |||||||| |||||||||||| |||| |
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| T |
35248160 |
gtgttctttgtagttttcaaaactttctgtgtgattacttcaagaagaagggattgtcaaacactgctaagattttcaaaaatgaagctcgagtt |
35248066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 35279498 - 35279462
Alignment:
| Q |
475 |
tcttcttcttcatctaagtgcaatttccttcaacatg |
511 |
Q |
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| T |
35279498 |
tcttcttcttcatctaagtgcaatttccttcatcatg |
35279462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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