View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_22 (Length: 457)
Name: NF12882_high_22
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 48167033 - 48166607
Alignment:
| Q |
18 |
attttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacat |
117 |
Q |
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| T |
48167033 |
attttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttgatacacat |
48166934 |
T |
|
| Q |
118 |
tttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacgaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
48166933 |
tttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaacaaaatt |
48166834 |
T |
|
| Q |
218 |
atgtcaatttcattgttagtttatttatgacagtctacaccattattagtggtgtatatttttcgtcnnnnnnnntcgtgaaatagactattaaacggac |
317 |
Q |
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| T |
48166833 |
atgtcaatttcattgttagtttatttatgacaatctacaccattattagtggtgtatatttttcgtcaaaaaaaatcgtgaaatagactattaaacggac |
48166734 |
T |
|
| Q |
318 |
ttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagcaagtcatgttcagcctagc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48166733 |
ttaccaaaaagtcaggtcaaaccttaaaaatgagcctatggcagactaataggacagattgaagcctaacattttcaaagtaagtcatgttcagcctagc |
48166634 |
T |
|
| Q |
418 |
aaagtttaacctagtctattttcacct |
444 |
Q |
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| T |
48166633 |
aaagtttaacctagtctattttcacct |
48166607 |
T |
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