View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_28 (Length: 396)
Name: NF12882_high_28
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 383
Target Start/End: Original strand, 18047364 - 18047733
Alignment:
| Q |
17 |
ttagatcaataaatctcgtcattaaattaaattcaatatgatatatttattgatcaaatagtggaaaagagatttgtggatggtgcgagagtaatttatt |
116 |
Q |
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| T |
18047364 |
ttagatcaataaatctcattgttaaattaaattaagtatgataggtttactgatccaatggtagaaaagagacatgttgatggtgcaagagtaatttact |
18047463 |
T |
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| Q |
117 |
tgtgc--aagttagacaaaccctaatttctctatcga---aaagttcattaatgagttatatttaatttggtgtaggtctcagacctcattgagaacttg |
211 |
Q |
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| T |
18047464 |
tgtgcgcatgttagacaaaccctaatttctctattaatcaaaaactcatcaatgagtcgtatttaatt--gtgtagatctcagacctcattgagaacttg |
18047561 |
T |
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| Q |
212 |
gaattaaattggccatctttgaggtgtccacaactcaaaagtattaaactatggtcacatgaatggatgaaacatggtacttgttcagaatctaagctta |
311 |
Q |
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| T |
18047562 |
gaattaaattggccatctttgaggtgtccacaactcaaaagtattaaactatggtcacatgaatggatgaaacatggtacctgttcagaatctaagctta |
18047661 |
T |
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| Q |
312 |
ctcaacatgactactttcaaacggctctcaaactcaagaaaaaattgaacatcattcaaatccttgagaacg |
383 |
Q |
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| T |
18047662 |
ctcaacatgactactttcaaacggctctcaaactcaagaaaaaattgaacatcattcaaatccttgagaacg |
18047733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 174 - 361
Target Start/End: Original strand, 18052507 - 18052694
Alignment:
| Q |
174 |
ttaatttggtgtaggtctcagacctcattgagaacttggaattaaattggccatctttgaggtgtccacaactcaaaagtattaaactatggtcacatga |
273 |
Q |
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| T |
18052507 |
ttaatttggtgtagatctcagacctcattgaggacttggaaataaattggccatctttgaggtgtccacgtctgaacaatattaaaatatggtcacatga |
18052606 |
T |
|
| Q |
274 |
atggatgaaacatggtacttgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaactcaagaaaaaattgaac |
361 |
Q |
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| T |
18052607 |
atggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaac |
18052694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 252 - 356
Target Start/End: Original strand, 18034905 - 18035009
Alignment:
| Q |
252 |
gtattaaactatggtcacatgaatggatgaaacatggtacttgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaactcaagaa |
351 |
Q |
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| T |
18034905 |
gtattagactttggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacagctctcaaactcaagaa |
18035004 |
T |
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| Q |
352 |
aaaat |
356 |
Q |
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||||| |
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| T |
18035005 |
aaaat |
18035009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 345
Target Start/End: Original strand, 18029018 - 18029201
Alignment:
| Q |
162 |
aatgagttatatttaatttggtgtaggtctcagacctcattgagaacttggaattaaattggccatctttgaggtgtccacaactcaaaagtattaaact |
261 |
Q |
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||||||||||||||||||| | ||| |||||||||| || ||||| |||| |||||||||||| |||| |||||| ||| || ||| | | |
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| T |
18029018 |
aatgagttatatttaattttatatagatctcagacctaatgaagaacatggagaagaattggccatctctgagctgtccaagtagcaatggttttagatt |
18029117 |
T |
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| Q |
262 |
atggtcacatgaatggatgaaacatggtacttgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaact |
345 |
Q |
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| T |
18029118 |
ctggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaact |
18029201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 17999662 - 17999698
Alignment:
| Q |
267 |
cacatgaatggatgaaacatggtacttgttcagaatc |
303 |
Q |
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| T |
17999662 |
cacatgaatgggagaaacatggtacttgttcagaatc |
17999698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 23681815 - 23681929
Alignment:
| Q |
20 |
gatcaataaatctcgtcattaaattaaattcaatatgat-atatttattgatcaaatagtggaaaagagatttgtggatggtgcgagagtaatttatttg |
118 |
Q |
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||||||||||| || | ||||||| |||| |||||||| | ||||| ||||||||||||| |||| | ||||||| ||||||| | | |||||||||| |
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| T |
23681815 |
gatcaataaatatcattattaaatcaaatgaaatatgatgacatttaatgatcaaatagtgaaaaataaatttgtgtatggtgcaataaaaatttatttg |
23681914 |
T |
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| Q |
119 |
tgcaagttagacaaa |
133 |
Q |
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|||| ||||||||| |
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| T |
23681915 |
tgcacattagacaaa |
23681929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 45806936 - 45806879
Alignment:
| Q |
17 |
ttagatcaataaatctcgtcattaaattaaattcaatatgatat-atttattgatcaa |
73 |
Q |
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| T |
45806936 |
ttagatcaataaatctcatcattaaattaaataaaacatgatgtgatttattgatcaa |
45806879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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