View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_29 (Length: 390)
Name: NF12882_high_29
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 43223779 - 43224158
Alignment:
| Q |
11 |
caaaggcactgtcttctgagaatctcaatttgaaaaatgacaattaaggagaagaatagacaactcctagtactactataacacagattccagagaccaa |
110 |
Q |
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| T |
43223779 |
caaaggcactgtcttctgagaatctcaatttgaaaaatgacaattaaggagaagaatagacaactcctagtactactataacacagattccagagaccaa |
43223878 |
T |
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| Q |
111 |
agtcaaactagtgacatcgagggttctcgttttctgaaacacgtggagataacagaacatgcccatgtggtataccttgttaaattgccgtccttttaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223879 |
agtcaaactagtgacatcgagggttctcgttttctgaaacacgtggagataacagaacatgcccatgtggtataccttgttaaattgccgtccttttaga |
43223978 |
T |
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| Q |
211 |
agactgcaacccatcaaccacattggataacaataacattaacttattctgatccatccctatcaattgcttctatatgatgatgctctatcgtggttct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43223979 |
agactgcaacccatcaaccacattggataacaataacattaacttattctgaaccatccctatcaattgcttctatatgatgatgctctatcgtggttct |
43224078 |
T |
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| Q |
311 |
tggcatatttggtcctcacttcacttacatcatatgctatatcaagccttgcactaactcaatcacattttggagaagca |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
43224079 |
tggcatatttggtcctcacttcacttacatcatatgctatatcaagccttgcactaactcaatgacattttgcagaagca |
43224158 |
T |
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